Evidence map›Paper›PMID 20033390›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2010

Fine mapping of pepper trichome locus 1 controlling trichome formation in Capsicum annuum L. CM334.

Hyun Jung Kim, Jung-Heon Han, Jin-Kyung Kwon, Minkyu Park, Byung-Dong Kim, Doil Choi

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Frontiers in plant science · 2021
    Article
  5. Genome-Wide Correlation of 36 Agronomic Traits in the 287 Pepper (International journal of molecular sciences · 2019
    Article
  6. QTL mapping of thrips resistance in pepper.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
  7. Article
  8. Fine-mapping of the woolly gene controlling multicellular trichome formation and embryonic development in tomato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
  9. Trichome density of main stem is tightly linked to PepMoV resistance in chili pepper (Capsicum annuum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hyun Jung KimDepartment of Plant Sciences, Plant Genomics and Breeding Institute, Seoul National University, Seoul, 151-921, South Korea.
Jung-Heon Han
Jin-Kyung Kwon
Minkyu Park
Byung-Dong Kim
Doil Choi
Seoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trichomes are present on nearly all land plants and protect plants against insect herbivores, drought and UV radiation. The trichome-bearing phenotype is conferred by the dominant allele of the pepper trichome locus 1 (Ptl1) in Capsicum annuum, Mexican 'Criollo de Morelos-334' (CM334). A genetic analysis using simple sequence repeats from pepper cDNA identified the HpmsE031 marker as tightly linked to Ptl1 in 653 individuals of an F(2) population derived from a cross between CM334 and Chilsungcho varieties. A bacterial artificial chromosome (BAC) library from CM334 covering 12x of the genome was screened using the HpmsE031 SSR marker as a probe and three BAC clones were identified. The Ptl1 region was covered by one 80 kb BAC clone, TT1B7. Fluorescence in situ hybridization (FISH) confirmed that TT1B7 localized to pepper chromosome 10. One co-dominant marker, Tco, and one dominant marker, Tsca, were successfully developed from the TT1B7 BAC sequence. Tco mapped 0.33 cM up from Ptl1 and Tsca mapped 0.75 cM down from Ptl1. Analysis of the BAC sequence predicts the presence of 14 open reading frames including 60S ribosomal protein L21-like protein (Solanum demissum), protein kinase 2 (Nicotiana tabacum), hypothetical proteins, and unnamed protein products. These results will provide not only useful information for map-based cloning of Ptl1 in Capsicum but also the starting points for analysis of R-gene cluster inked with Ptl1.

Indexed as

Base SequenceCapsicumChromosomes, Artificial, BacterialChromosome SegregationChromosomes, PlantGene LibraryGenetic LociGenetic MarkersIn Situ Hybridization, FluorescenceMinisatellite RepeatsMolecular Sequence DataPhenotypePhysical Chromosome MappingPlant EpidermisPlant LeavesReproducibility of ResultsGenetic Markers

Identifiers

PMID20033390
OpenAlexW2054926813

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.