Evidence map›Paper›PMID 20033039›Full record

ArticleNature2009

The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes.

Lisa R Racki, Janet G Yang, Nariman Naber, Peretz D Partensky, Ashley Acevedo, Thomas J Purcell, Roger Cooke, Yifan Cheng, Geeta J Narlikar

Open access · greenAbstract read
In one paragraph

Article in Nature, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 178 citations in OpenAlex.

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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Lisa R RackiDepartment of Biochemistry and Biophysics, University of California, San Francisco, California 94158, USA.
Janet G Yang
Nariman Naber
Peretz D Partensky
Ashley Acevedo
Thomas J Purcell
Roger Cooke
Yifan Cheng
Geeta J Narlikar
University of California, San Francisco · US

Funding

Mechanistic Analysis of Chromatin RemodelingR01GM073767 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NARLIKAR, GEETA J · 2005 to 2018
$4.7M
NIGMS NIH HHS R01 GM073767
6 · The paper itself

Abstract

Evenly spaced nucleosomes directly correlate with condensed chromatin and gene silencing. The ATP-dependent chromatin assembly factor (ACF) forms such structures in vitro and is required for silencing in vivo. ACF generates and maintains nucleosome spacing by constantly moving a nucleosome towards the longer flanking DNA faster than the shorter flanking DNA. How the enzyme rapidly moves back and forth between both sides of a nucleosome to accomplish bidirectional movement is unknown. Here we show that nucleosome movement depends cooperatively on two ACF molecules, indicating that ACF functions as a dimer of ATPases. Further, the nucleotide state determines whether the dimer closely engages one or both sides of the nucleosome. Three-dimensional reconstruction by single-particle electron microscopy of the ATPase-nucleosome complex in an activated ATP state reveals a dimer architecture in which the two ATPases face each other. Our results indicate a model in which the two ATPases work in a coordinated manner, taking turns to engage either side of a nucleosome, thereby allowing processive bidirectional movement. This novel dimeric motor mechanism differs from that of dimeric motors such as kinesin and dimeric helicases that processively translocate unidirectionally and reflects the unique challenges faced by motors that move nucleosomes.

Indexed as

Models, MolecularAdenosine TriphosphatasesAdenosine TriphosphateAnimalsBromodomain Containing ProteinsCell LineChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneDimerizationGene SilencingHistonesHumansMicroscopy, Electron, TransmissionMultiprotein ComplexesNucleosomesProtein BindingAdenosine TriphosphatasesAdenosine TriphosphateBAZ1A protein, humanBromodomain Containing ProteinsChromosomal Proteins, Non-HistoneHistonesMultiprotein ComplexesNucleosomesTranscription Factors

Identifiers

PMID20033039
PMCPMC2869534
OpenAlexW2011958170

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.