Evidence map›Paper›PMID 20031219›Full record

ArticleMolecular immunology2010

Exploring peptide mimics for the production of antibodies against discontinuous protein epitopes.

Melita B Irving, Lisa Craig, Alfredo Menendez, Beechanahalli P Gangadhar, Marinieve Montero, Nienke E van Houten, Jamie K Scott

Abstract read
In one paragraph

Article in Molecular immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  14. Complex binding sites made to order.Nature biotechnology · 2012
    Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Melita B IrvingDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.
Lisa Craig
Alfredo Menendez
Beechanahalli P Gangadhar
Marinieve Montero
Nienke E van Houten
Jamie K Scott

Funding

Peptide Vaccines to Elicit HIV-1-Neutralizing AntibodiesR01AI049111 · NIAID · SIMON FRASER UNIVERSITY · PI SCOTT, JAMIE KATHLEEN · 2002 to 2006
$1.2M
PEPTIDE MIMICS OF NEUTRALIZING SITES ON HIV ENV PROTEINSR21AI044395 · NIAID · SIMON FRASER UNIVERSITY · PI SCOTT, JAMIE K · 1998 to 1999
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NIAID NIH HHS AI44395NIAID NIH HHS AI4911NIAID NIH HHS R01 AI049111NIAID NIH HHS R21 AI044395
6 · The paper itself

Abstract

Peptide "mimics" (mimotopes) of linear protein epitopes and carbohydrate epitopes have been successfully used as immunogens to elicit cross-reactive antibodies against their cognate epitopes; however, immunogenic mimicry has been difficult to achieve for discontinuous protein epitopes. To explore this, we developed from phage-displayed peptide libraries optimized peptide mimics for three well-characterized discontinuous epitopes on hen egg lysozyme and horse cytochrome c. The peptides competed with their cognate antigens for antibody binding, displayed affinities in the nM range, and shared critical binding residues with their native epitopes. Yet, while immunogenic, none of the peptides elicited antibodies that cross-reacted with their cognate antigens. We analyzed the 3-D structure of the site within each discontinuous epitope that shared critical binding residues with its peptide mimic, and observed that in each case it formed a ridge-like patch on the epitope; in no case did it cover most or all of the epitope. Thus, the peptides' lack of immunogenic mimicry could be attributed to their inability to recapitulate the topological features of their cognate epitopes. Our results suggest that direct peptide immunizations are not a practical strategy for generating targeted antibody responses against discontinuous epitopes.

Indexed as

AnimalsAntibodiesAntibody SpecificityAntigensEpitopesFemaleMiceMice, Inbred BALB CMolecular MimicryMuramidasePeptidesProtein Structure, TertiaryAntibodiesAntigensEpitopesMuramidasePeptides

Identifiers

PMID20031219
PMCPMC2821332

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.