Evidence map›Paper›PMID 20029386›Full record

ArticleThe pharmacogenomics journal2010

A TOMM40 variable-length polymorphism predicts the age of late-onset Alzheimer's disease.

A D Roses, M W Lutz, H Amrine-Madsen, A M Saunders, D G Crenshaw, S S Sundseth, M J Huentelman, K A Welsh-Bohmer, E M Reiman

Open access · bronzeAbstract read
In one paragraph

Article in The pharmacogenomics journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 226 papers, 9 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
226citing papers in PubMed, 9 pooled it
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

226 citing papers in PubMed, 9 syntheses or guidelines pooled it, 389 citations in OpenAlex.

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  11. Risk disclosure and preclinical Alzheimer's disease clinical trial enrollment.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2013
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  14. bioRxiv : the preprint server for biology · 2026
    Article
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166 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

A D RosesDepartment of Medicine, Duke University, Durham, NC 27708-0120, USA. allen.roses@duke.edu
M W Lutz
H Amrine-Madsen
A M Saunders
D G Crenshaw
S S Sundseth
M J Huentelman
K A Welsh-Bohmer
E M Reiman
Duke University · USTranslational Genomics Research Institute · USResearch Triangle Park Foundation · US

Funding

Research Education ComponentP30AG019610 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI GONZALEZ HERNANDEZ, GRACIELA · 2001 to 2020
$32.5M
PET, APOE & the Preclinical Course of Alzheimer's DiseaseR01AG031581 · NIA · BANNER ALZHEIMER'S INSTITUTE · PI CASELLI, RICHARD J., REIMAN, ERIC MICHAEL · 2008 to 2018
$16.6M
NEUROPATHOLOGY COREP30AG028377 · NIA · DUKE UNIVERSITY · PI WELSH-BOHMER, KATHLEEN ANNE · 2006 to 2011
$9.6M
Genetic Variation in KIBRA and its role in Human Episodic MemoryR01NS059873 · NINDS · TRANSLATIONAL GENOMICS RESEARCH INST · PI HUENTELMAN, MATT · 2008 to 2011
$1.4M
Genetic Factors that Impact the Risk of Alzheimer's DiseaseRC1AG035635 · NIA · DUKE UNIVERSITY · PI ROSES, ALLEN D · 2009 to 2010
$820k
NIA NIH HHS 1RC1 AG03563501NIA NIH HHS AG028377NIA NIH HHS P30 AG019610NIA NIH HHS P30 AG028377NIA NIH HHS P30 AG19610NIA NIH HHS R01 AG031581NIA NIH HHS RC1 AG035635NINDS NIH HHS R01 NS059873
6 · The paper itself

Abstract

The ɛ4 allele of the apolipoprotein E (APOE) gene is currently the strongest and most highly replicated genetic factor for risk and age of onset of late-onset Alzheimer's disease (LOAD). Using phylogenetic analysis, we have identified a polymorphic poly-T variant, rs10524523, in the translocase of outer mitochondrial membrane 40 homolog (TOMM40) gene that provides greatly increased precision in the estimation of age of LOAD onset for APOE ɛ3 carriers. In two independent clinical cohorts, longer lengths of rs10524523 are associated with a higher risk for LOAD. For APOE ɛ3/4 patients who developed LOAD after 60 years of age, individuals with long poly-T repeats linked to APOE ɛ3 develop LOAD on an average of 7 years earlier than individuals with shorter poly-T repeats linked to APOE ɛ3 (70.5 ± 1.2 years versus 77.6 ± 2.1 years, P=0.02, n=34). Independent mutation events at rs10524523 that occurred during Caucasian evolution have given rise to multiple categories of poly-T length variants at this locus. On replication, these results will have clinical utility for predictive risk estimates for LOAD and for enabling clinical disease prevention studies. In addition, these results show the effective use of a phylogenetic approach for analysis of haplotypes of polymorphisms, including structural polymorphisms, which contribute to complex diseases.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAgedAged, 80 and overAge of OnsetAlzheimer DiseaseApolipoprotein E3Apolipoprotein E4Case-Control StudiesCohort StudiesDNAFemaleGenetic TestingHumansLinkage DisequilibriumMaleApolipoprotein E3Apolipoprotein E4DNAMembrane Transport ProteinsMitochondrial Precursor Protein Import Complex ProteinsTOMM40 protein, human

Identifiers

PMID20029386
PMCPMC2946560
OpenAlexW2037169299

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.