ArticleBioinformatics (Oxford, England)2010
GonadSAGE: a comprehensive SAGE database for transcript discovery on male embryonic gonad development.
Article in Bioinformatics (Oxford, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
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- Sex chromosomes in the tribe Cyprichromini (Teleostei: Cichlidae) of Lake Tanganyika.Scientific reports · 2022Article
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- Hi-C deconvolution of a textile dye-related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes.International microbiology : the official journal of the Spanish Society for Microbiology · 2022Article
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- Assessment of the impact of mitochondrial genotype upon drug-induced mitochondrial dysfunction in platelets derived from healthy volunteers.Archives of toxicology · 2021Article
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- Germline variants of Brazilian women with breast cancer and detection of a novel pathogenic ATM deletion in early-onset breast cancer.Breast cancer (Tokyo, Japan) · 2021Article
- Impact of concurrency on the performance of a whole exome sequencing pipeline.BMC bioinformatics · 2021Article
- Impact of concurrency on the performance of a whole exome sequencing pipeline.BMC bioinformatics · 2021Article
- Epigenomic, genomic, and transcriptomic landscape of schwannomatosis.Acta neuropathologica · 2021Article
- The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.Nucleic acids research · 2015Article
- GermlncRNA: a unique catalogue of long non-coding RNAs and associated regulations in male germ cell development.Database : the journal of biological databases and curation · 2015Article
- Characterization of gonadal transcriptomes from Nile tilapia (Oreochromis niloticus) reveals differentially expressed genes.PloS one · 2013Article
Corrections and comments
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Authors and funding
9 authors.
Funding
Abstract
summarySerial analysis of gene expression (SAGE) provides an alternative, with additional advantages, to microarray gene expression studies. GonadSAGE is the first publicly available web-based SAGE database on male gonad development that covers six male mouse embryonic gonad stages, including E10.5, E11.5, E12.5, E13.5, E15.5 and E17.5. The sequence coverage of each SAGE library is beyond 150K, 'which is the most extensive sequence-based male gonadal transcriptome to date'. An interactive web interface with customizable parameters is provided for analyzing male gonad transcriptome information. Furthermore, the data can be visualized and analyzed with the other genomic features in the UCSC genome browser. It represents an integrated platform that leads to a better understanding of male gonad development, and allows discovery of related novel targets and regulatory pathways.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.