Evidence map›Paper›PMID 20028125›Full record

ArticleBiochemistry2010

Functional studies and modeling of pore-lining residue mutants of the influenza a virus M2 ion channel.

Victoria Balannik, Vincenzo Carnevale, Giacomo Fiorin, Benjamin G Levine, Robert A Lamb, Michael L Klein, William F Degrado, Lawrence H Pinto

Abstract read
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Activation of the influenza B M2 proton channel (BM2).bioRxiv : the preprint server for biology · 2024
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  20. Influenza A Virus M2 Protein: Roles from Ingress to Egress.International journal of molecular sciences · 2017
    Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Victoria BalannikDepartment of Neurobiology and Physiology, Northwestern University, Evanston, Illinois 60208-3500, USA.
Vincenzo Carnevale
Giacomo Fiorin
Benjamin G Levine
Robert A Lamb
Michael L Klein
William F Degrado
Lawrence H Pinto

Funding

Development of drugs that target the M2 proton channel from the influenza A VirusU01AI074571 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 2008 to 2012
$7.5M
The Structure and Function of the Influenza Virus GenomeR01AI020201 · NIAID · NORTHWESTERN UNIVERSITY · PI LAMB, ROBERT A · 1985 to 2016
$2.8M
Studies on Influenza B Virus BM2 Protein Ion ChannelR01AI057363 · NIAID · NORTHWESTERN UNIVERSITY · PI PINTO, LAWRENCE H · 2005 to 2009
$1.4M
CONTROL OF CELL MOTILITYR01GM056416 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SAMMAK, PAUL J · 1997 to 2000
$132k
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI020201NIAID NIH HHS R01 AI057363NIAID NIH HHS R01AI-20201NIAID NIH HHS R01 AI-57363NIAID NIH HHS R01 AI-74517NIAID NIH HHS U01 AI074571NIAID NIH HHS U01 AI-1074571NIGMS NIH HHS GM56416
6 · The paper itself

Abstract

The A/M2 protein of influenza A virus forms a tetrameric proton-selective pH-gated ion channel. The H(37)xxxW(41) motif located in the channel pore is responsible for its gating and proton selectivity. Channel activation most likely involves protonation of the H37 residues, while the conductive state of the channel is characterized by two or three charged His residues in a tetrad. A/M2 channel activity is inhibited by the antiviral drug amantadine. Although a large number of functional amantadine-resistant mutants of A/M2 have been observed in vitro, only a few are observed in highly transmissible viruses in the presence or absence of amantadine. We therefore examined 49 point mutants of the pore-lining residues, representing both natural and nonnatural variants. Their ion selectivity, amantadine sensitivity, specific activity, and pH-dependent conductance were measured in Xenopus oocytes. These measurements showed how variations in the sequence lead to variations in the proton conduction. The results are consistent with a multistep mechanism that allows the protein to fine-tune its pH-rate profile over a wide range of proton concentrations, hypothesized to arise from different protonation states of the H37 tetrad. Mutations that give native-like conductance at low pH as well as minimal leakage current at pH 7.0 were surprisingly rare. Moreover, the results are consistent with a location of the amantadine-binding site inside the channel pore. These findings have helped to define the set of functionally fit mutants that should be targeted when considering the design of novel drugs that inhibit amantadine-resistant strains of influenza A virus.

Indexed as

MutationAntiviral AgentsBinding SitesDrug Resistance, ViralHydrogen-Ion ConcentrationInfluenza A virusIon Channel GatingIon ChannelsModels, MolecularProtein ConformationProtonsStructure-Activity RelationshipViral Matrix ProteinsViroporin ProteinsAntiviral AgentsIon ChannelsM2 protein, Influenza A virusProtonsViral Matrix ProteinsViroporin Proteins

Identifiers

PMID20028125
PMCPMC4924815

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.