Evidence map›Paper›PMID 20027307›Full record

ArticlePloS one2009

Expression of the VP2 protein of murine norovirus by a translation termination-reinitiation strategy.

Sawsan Napthine, Robert A Lever, Michael L Powell, Richard J Jackson, T David K Brown, Ian Brierley

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

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  12. Norovirus mechanisms of immune antagonism.Current opinion in virology · 2016
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  19. Tinkering with translation: protein synthesis in virus-infected cells.Cold Spring Harbor perspectives in biology · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sawsan NapthineDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.
Robert A Lever
Michael L Powell
Richard J Jackson
T David K Brown
Ian Brierley
University of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C007034/1Biotechnology and Biological Sciences Research Council BB/D008190/1Biotechnology and Biological Sciences Research Council RG41021
6 · The paper itself

Abstract

backgroundExpression of the minor virion structural protein VP2 of the calicivirus murine norovirus (MNV) is believed to occur by the unusual mechanism of termination codon-dependent reinitiation of translation. In this process, following translation of an upstream open reading frame (ORF) and termination at the stop codon, a proportion of 40S subunits remain associated with the mRNA and reinitiate at the AUG of a downstream ORF, which is typically in close proximity. Consistent with this, the VP2 start codon (AUG) of MNV overlaps the stop codon of the upstream VP1 ORF (UAA) in the pentanucleotide UAAUG. PRINCIPAL

findingsHere, we confirm that MNV VP2 expression is regulated by termination-reinitiation and define the mRNA sequence requirements. Efficient reintiation is dependent upon 43 nt of RNA immediately upstream of the UAAUG site. Chemical and enzymatic probing revealed that the RNA in this region is not highly structured and includes an essential stretch of bases complementary to 18S rRNA helix 26 (Motif 1). The relative position of Motif 1 with respect to the UAAUG site impacts upon the efficiency of the process. Termination-reinitiation in MNV was also found to be relatively insensitive to the initiation inhibitor edeine.

conclusionsThe termination-reinitiation signal of MNV most closely resembles that of influenza BM2. Similar to other viruses that use this strategy, base-pairing between mRNA and rRNA is likely to play a role in tethering the 40S subunit to the mRNA following termination at the VP1 stop codon. Our data also indicate that accurate recognition of the VP2 ORF AUG is not a pre-requisite for efficient reinitiation of translation in this system.

Indexed as

Peptide Chain Initiation, TranslationalPeptide Chain Termination, Translational5' Flanking RegionAnimalsBase SequenceCodon, InitiatorCodon, TerminatorEdeineLuciferasesMiceMolecular Sequence DataNorovirusNucleic Acid ConformationNucleotidesRegulatory Sequences, Nucleic AcidRNA, ComplementaryCodon, InitiatorCodon, TerminatorEdeineLuciferasesNucleotidesRNA, ComplementaryRNA, MessengerRNA, Ribosomal, 18SRNA, ViralViral Proteins

Identifiers

PMID20027307
PMCPMC2793014
OpenAlexW2021551988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.