Evidence map›Paper›PMID 20026609›Full record

ArticleThe Journal of biological chemistry2010

Dynamic changes in the subcellular distribution of Gpd1p in response to cell stress.

Sunhee Jung, Marcello Marelli, Richard A Rachubinski, David R Goodlett, John D Aitchison

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 86 citations in OpenAlex.

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  17. New Genes Involved in Osmotic Stress Tolerance inFrontiers in microbiology · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Sunhee JungInstitute for Systems Biology, Seattle, Washington 98103, USA.
Marcello Marelli
Richard A Rachubinski
David R Goodlett
John D Aitchison
University of Washington · USInstitute for Systems Biology · USUniversity of Alberta · CA

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
NEW TOOLS FOR EXPLORING THE DYNAMIC INTERACTOME(RMI)U54RR022220 · NCRR · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2005 to 2011
$19.3M
Oleate-responsive gene regulatory networks governing peroxisome proliferationR01GM075152 · NIGMS · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI AITCHISON, JOHN D. · 2008 to 2011
$1.9M
CIHR 53326NCRR NIH HHS RR022220NCRR NIH HHS U54 RR022220NIGMS NIH HHS GM075152NIGMS NIH HHS GM076547NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R01 GM075152
6 · The paper itself

Abstract

Gpd1p is a cytosolic NAD(+)-dependent glycerol 3-phosphate dehydrogenase that also localizes to peroxisomes and plays an essential role in the cellular response to osmotic stress and a role in redox balance. Here, we show that Gpd1p is directed to peroxisomes by virtue of an N-terminal type 2 peroxisomal targeting signal (PTS2) in a Pex7p-dependent manner. Significantly, localization of Gpd1p to peroxisomes is dependent on the metabolic status of cells and the phosphorylation of aminoacyl residues adjacent to the targeting signal. Exposure of cells to osmotic stress induces changes in the subcellular distribution of Gpd1p to the cytosol and nucleus. This behavior is similar to Pnc1p, which is coordinately expressed with Gpd1p, and under conditions of cell stress changes its subcellular distribution from peroxisomes to the nucleus where it mediates chromatin silencing. Although peroxisomes are necessary for the beta-oxidation of fatty acids in yeast, the localization of Gpd1p to peroxisomes is not. Rather, shifts in the distribution of Gpd1p to different cellular compartments in response to changing cellular status suggests a role for Gpd1p in the spatial regulation of redox potential, a process critical to cell survival, especially under the complex stress conditions expected to occur in the wild.

Indexed as

Oxidative StressGlycerolphosphate DehydrogenaseOxidation-ReductionPeroxisomal Targeting Signal 2 ReceptorPeroxisomesProtein TransportReceptors, Cytoplasmic and NuclearYeastsGlycerolphosphate DehydrogenasePeroxisomal Targeting Signal 2 ReceptorReceptors, Cytoplasmic and Nuclear

Identifiers

PMID20026609
PMCPMC2825468
OpenAlexW2050239959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.