Evidence map›Paper›PMID 20026607›Full record

ArticleThe Journal of biological chemistry2010

Repair of O4-alkylthymine by O6-alkylguanine-DNA alkyltransferases.

Qingming Fang, Sreenivas Kanugula, Julie L Tubbs, John A Tainer, Anthony E Pegg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Qingming FangDepartment of Cellular and Molecular Physiology, Pennsylvania State University College of Medicine, Hershey, Pennsylvania 17033, USA. quf2@psu.edu.
Sreenivas Kanugula
Julie L Tubbs
John A Tainer
Anthony E Pegg
Pennsylvania State University · USLawrence Berkeley National Laboratory · USScripps Research Institute · US

Funding

Structural Biochemistry of DNA DealkylationR01CA097209 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI TAINER, JOHN A. · 2002 to 2014
$4.4M
PERSISTENCE OF ALKYLATED DNA IN CARCINOGENESISR01CA018137 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI KANUGULA, SREENIVAS · 1985 to 2011
$2.8M
ALKYLTRANSFERASE INHIBITORS FOR CANCER CHEMOTHERAPYR01CA071976 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI KANUGULA, SREENIVAS · 1996 to 2010
$2.7M
NCI NIH HHS CA-071976NCI NIH HHS CA-097209NCI NIH HHS R01 CA018137NCI NIH HHS R01-CA018137NCI NIH HHS R01 CA071976NCI NIH HHS R01 CA097209
6 · The paper itself

Abstract

O(6)-Alkylguanine-DNA alkyltransferase (AGT) plays a major role in repair of the cytotoxic and mutagenic lesion O(6)-methylguanine (m(6)G) in DNA. Unlike the Escherichia coli alkyltransferase Ogt that also repairs O(4)-methylthymine (m(4)T) efficiently, the human AGT (hAGT) acts poorly on m(4)T. Here we made several hAGT mutants in which residues near the cysteine acceptor site were replaced by corresponding residues from Ogt to investigate the basis for the inefficiency of hAGT in repair of m(4)T. Construct hAGT-03 (where hAGT sequence -V(149)CSSGAVGN(157)- was replaced with the corresponding Ogt -I(143)GRNGTMTG(151)-) exhibited enhanced m(4)T repair activity in vitro compared with hAGT. Three AGT proteins (hAGT, hAGT-03, and Ogt) exhibited similar protection from killing by N-methyl-N'-nitro-N-nitrosoguanidine and caused a reduction in m(6)G-induced G:C to A:T mutations in both nucleotide excision repair (NER)-proficient and -deficient Escherichia coli strains that lack endogenous AGTs. hAGT-03 resembled Ogt in totally reducing the m(4)T-induced T:A to C:G mutations in NER-proficient and -deficient strains. Surprisingly, wild type hAGT expression caused a significant but incomplete decrease in NER-deficient strains but a slight increase in T:A to C:G mutation frequency in NER-proficient strains. The T:A to C:G mutations due to O(4)-alkylthymine formed by ethylating and propylating agents were also efficiently reduced by either hAGT-03 or Ogt, whereas hAGT had little effect irrespective of NER status. These results show that specific alterations in the hAGT active site facilitate efficient recognition and repair of O(4)-alkylthymines and reveal damage-dependent interactions of base and nucleotide excision repair.

Indexed as

AlkylationCatalytic DomainDNA AdductsDNA DamageDNA RepairEscherichia coliEthaneHumansMethaneMutagenesisO(6)-Methylguanine-DNA MethyltransferasePropaneProtein Structure, TertiaryThymineDNA AdductsEthaneMethaneO(6)-Methylguanine-DNA MethyltransferasePropaneThymine

Identifiers

PMID20026607
PMCPMC2832970
OpenAlexW2026287766

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.