ArticleFungal genetics and biology : FG & B2010
The filamentous fungal gene expression database (FFGED).
Article in Fungal genetics and biology : FG & B, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
19 citing papers in PubMed, 31 citations in OpenAlex.
- Rust expression browser: an open source database for simultaneous analysis of host and pathogen gene expression profiles with expVIP.BMC genomics · 2021Article
- Fungi.guru: Comparative genomic and transcriptomic resource for the fungi kingdom.Computational and structural biotechnology journal · 2020Article
- Compartmentalized gene regulatory network of the pathogenic fungus Fusarium graminearum.The New phytologist · 2016Article
- Conservation and divergence of the cyclic adenosine monophosphate-protein kinase A (cAMP-PKA) pathway in two plant-pathogenic fungi: Fusarium graminearum and F. verticillioides.Molecular plant pathology · 2016Article
- The aging biological clock in Neurospora crassa.Ecology and evolution · 2014Article
- Global gene expression and focused knockout analysis reveals genes associated with fungal fruiting body development in Neurospora crassa.Eukaryotic cell · 2014Article
- Gene expression differences among three Neurospora species reveal genes required for sexual reproduction in Neurospora crassa.PloS one · 2014Article
- Sex-linked transcriptional divergence in the hermaphrodite fungus Neurospora tetrasperma.Proceedings. Biological sciences · 2013Article
- Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi.BMC evolutionary biology · 2012Article
- Diversification of a protein kinase cascade: IME-2 is involved in nonself recognition and programmed cell death in Neurospora crassa.Genetics · 2012Article
- Sex-specific gene expression during asexual development of Neurospora crassa.Fungal genetics and biology : FG & B · 2012Article
- Differential impact of nutrition on developmental and metabolic gene expression during fruiting body development in Neurospora crassa.Fungal genetics and biology : FG & B · 2012Article
- Abundant gene-by-environment interactions in gene expression reaction norms to copper within Saccharomyces cerevisiae.Genome biology and evolution · 2012Article
- Article
- Fungal pathogenicity genes in the age of 'omics'.Molecular plant pathology · 2011Review
- Systems biology of the qa gene cluster in Neurospora crassa.PloS one · 2011Article
- Multi-targeted priming for genome-wide gene expression assays.BMC genomics · 2010Article
- Meiotic regulators Ndt80 and ime2 have different roles in Saccharomyces and Neurospora.Genetics · 2010Article
- Characterization of the temperature-sensitive mutations un-7 and png-1 in Neurospora crassa.PloS one · 2010Article
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
Abstract
Filamentous fungal gene expression assays provide essential information for understanding systemic cellular regulation. To aid research on fungal gene expression, we constructed a novel, comprehensive, free database, the filamentous fungal gene expression database (FFGED), available at http://bioinfo.townsend.yale.edu. FFGED features user-friendly management of gene expression data, which are assorted into experimental metadata, experimental design, raw data, normalized details, and analysis results. Data may be submitted in the process of an experiment, and any user can submit multiple experiments, thus classifying the FFGED as an "active experiment" database. Most importantly, FFGED functions as a collective and collaborative platform, by connecting each experiment with similar related experiments made public by other users, maximizing data sharing among different users, and correlating diverse gene expression levels under multiple experimental designs within different experiments. A clear and efficient web interface is provided with enhancement by AJAX (Asynchronous JavaScript and XML) and through a collection of tools to effectively facilitate data submission, sharing, retrieval and visualization.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.