Evidence map›Paper›PMID 20025863›Full record

ReviewDevelopmental biology2010

Enhancers: the abundance and function of regulatory sequences beyond promoters.

Michael Bulger, Mark Groudine

Open access · greenAbstract readReview
In one paragraph

Review in Developmental biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 206 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. The Stochastic Genome and Its Role in Gene Expression.Cold Spring Harbor perspectives in biology · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. The regulatory genome of the malaria vectorNAR genomics and bioinformatics · 2021
    Article

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Michael BulgerCenter for Pediatric Biomedical Research, Department of Pediatrics, University of Rochester, Rochester, NY, USA. Michael_Bulger@urmc.rochester.edu
Mark Groudine
University of Rochester Medical Center · USUniversity of Washington · US

Funding

MAINTENANCE OF GENE EXPRESSION IN THE RED CELL LINEAGER01HL065440 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 2000 to 2018
$12.4M
FUNCTION OF HUMAN &MOUSE B GLOBIN LOCUS CONTROL REGIONSR37DK044746 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 1997 to 2016
$12.3M
Function of active chromatin domains in erythropoiesisR01DK070687 · NIDDK · UNIVERSITY OF ROCHESTER · PI BULGER, MICHAEL D · 2007 to 2016
$2.5M
NHLBI NIH HHS R01 HL065440NIDDK NIH HHS R01 DK070687NIDDK NIH HHS R37 DK044746
6 · The paper itself

Abstract

Transcriptional control in mammals and Drosophila is often mediated by regulatory sequences located far from gene promoters. Different classes of such elements - particularly enhancers, but also locus control regions and insulators - have been defined by specific functional assays, although it is not always clear how these assays relate to the function of these elements within their native loci. Recent advances in genomics suggest, however, that such elements are highly abundant within the genome and may represent the primary mechanism by which cell- and developmental-specific gene expression is accomplished. In this review, we discuss the functional parameters of enhancers as defined by specific assays, along with the frequency with which they occur in the genome. In addition, we examine the available evidence for the mechanism by which such elements communicate or interact with the promoters they regulate.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, DevelopmentalAnimalsCell NucleusChromatinDNADrosophilaHumansModels, BiologicalNuclear ProteinsPromoter Regions, GeneticChromatinDNANuclear Proteins

Identifiers

PMID20025863
PMCPMC3060611
OpenAlexW2022993325

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.