Evidence map›Paper›PMID 20023718›Full record

ReviewMolecular bioSystems2009

Global signatures of protein and mRNA expression levels.

Raquel de Sousa Abreu, Luiz O Penalva, Edward M Marcotte, Christine Vogel

Abstract readReview
In one paragraph

Review in Molecular bioSystems, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 687 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
687citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

687 citing papers in PubMed, 4 syntheses or guidelines pooled it.

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627 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Raquel de Sousa AbreuChildren's Cancer Research Institute, University of Texas Health Science Center at San Antonio, TX, USA.
Luiz O Penalva
Edward M Marcotte
Christine Vogel

Funding

Proteomics of widespread, reversible protein assemblies in aging and aggregationR01GM076536 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MARCOTTE, EDWARD M · 2006 to 2014
$2.9M
NIGMS NIH HHS R01 GM076536
6 · The paper itself

Abstract

Cellular states are determined by differential expression of the cell's proteins. The relationship between protein and mRNA expression levels informs about the combined outcomes of translation and protein degradation which are, in addition to transcription and mRNA stability, essential contributors to gene expression regulation. This review summarizes the state of knowledge about large-scale measurements of absolute protein and mRNA expression levels, and the degree of correlation between the two parameters. We summarize the information that can be derived from comparison of protein and mRNA expression levels and discuss how corresponding sequence characteristics suggest modes of regulation.

Indexed as

Protein BiosynthesisComputational BiologyEscherichia coliHumansProteinsRNA, MessengerUbiquitinationYeastsProteinsRNA, Messenger

Identifiers

PMID20023718
PMCPMC4089977

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.