Evidence map›Paper›PMID 20023081›Full record

ArticleApplied and environmental microbiology2010

A mariner-based transposon system for in vivo random mutagenesis of Clostridium difficile.

Stephen T Cartman, Nigel P Minton

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A set of genetic tools for use inMicrobiology (Reading, England) · 2026
    Article
  5. Nanoluciferase-Based Reporters for Clostridioides difficile.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  6. Article
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  8. Article
  9. Gene essentiality in the solventogenicApplied and environmental microbiology · 2024
    Article
  10. mSphere · 2024
    Article
  11. Article
  12. mBio · 2024
    Article
  13. Article
  14. RipE expression correlates with high ATP levels inFrontiers in cellular and infection microbiology · 2024
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Open forum infectious diseases · 2023
    Article

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Stephen T CartmanCentre for Biomolecular Sciences, School of Molecular Medical Sciences, Nottingham Digestive Diseases Centre, NIHR Biomedical Research Unit, The University of Nottingham, University Park, Nottingham NG72RD, United Kingdom.
Nigel P Minton

Funding

Medical Research Council G0601176
6 · The paper itself

Abstract

Understanding the molecular basis of Clostridium difficile infection is a prerequisite to the development of effective countermeasures. Although there are methods for constructing gene-specific mutants of C. difficile, currently there is no effective method for generating libraries of random mutants. In this study, we developed a novel mariner-based transposon system for in vivo random mutagenesis of C. difficile R20291, the BI/NAP1/027 epidemic strain at the center of the C. difficile outbreaks in Stoke Mandeville, United Kingdom, in 2003 to 2004 and 2004 to 2005. Transposition occurred at a frequency of 4.5 (+/-0.4) x 10(-4) per cell to give stable insertions at random genomic loci, which were defined only by the nucleotide sequence TA. Furthermore, mutants with just a single transposon insertion were generated in an overwhelming majority (98.3% in this study). Phenotypic screening of a C. difficile R20291 random mutant library yielded a sporulation/germination-defective clone with an insertion in the germination-specific protease gene cspBA and an auxotroph with an insertion in the pyrimidine biosynthesis gene pyrB. These results validate our mariner-based transposon system for use in forward genetic studies of C. difficile.

Indexed as

DNA Transposable ElementsBase SequenceChromosome MappingClostridioides difficileDNA, BacterialDNA-Binding ProteinsDNA PrimersEnterocolitis, PseudomembranousGene LibraryGenes, BacterialHumansMutagenesis, InsertionalPhenotypePlasmidsTransposasesDNA, BacterialDNA-Binding ProteinsDNA PrimersDNA Transposable Elementsmariner transposasesTransposases

Identifiers

PMID20023081
PMCPMC2820977

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.