Evidence map›Paper›PMID 20019841›Full record

ArticleNeoplasia (New York, N.Y.)2009

Epigenetic silencing of CRABP2 and MX1 in head and neck tumors.

Marilia F Calmon, Rodrigo V Rodrigues, Carla M Kaneto, Ricardo P Moura, Sabrina D Silva, Louise Danielle C Mota, Daniel G Pinheiro, Cesar Torres, Alex F de Carvalho, Patrícia M Cury and 13 more

Open access · goldAbstract read
In one paragraph

Article in Neoplasia (New York, N.Y.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 98 citations in OpenAlex.

  1. Prognostic role of CRABP2 in lung cancer: a meta-analysis.Journal of cardiothoracic surgery · 2024
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 2 countries.

Marilia F CalmonDepartment of Biology, IBILCE-UNESP, São José do Rio Preto-SP, Brazil.
Rodrigo V Rodrigues
Carla M Kaneto
Ricardo P Moura
Sabrina D Silva
Louise Danielle C Mota
Daniel G Pinheiro
Cesar Torres
Alex F de Carvalho
Patrícia M Cury
Fabio D Nunes
Ines Nobuko Nishimoto
Fernando A Soares
Adriana M A da Silva
Luis P Kowalski
Helena Brentani
Cleslei F Zanelli
Wilson A Silva
Paula Rahal
Eloiza H Tajara
Dirce M Carraro
Anamaria A Camargo
Sandro R Valentini
AC Camargo Hospital · BRFaculdade de Medicina de São José do Rio Preto · BRUniversidade de Ribeirão Preto · BRUniversidade Estadual Paulista (Unesp) · BRHospital São Paulo · BRLudwig Cancer Research · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Head and neck squamous cell carcinoma (HNSCC) is a heterogeneous disease affecting the epithelium of the oral cavity, pharynx and larynx. Conditions of most patients are diagnosed at late stages of the disease, and no sensitive and specific predictors of aggressive behavior have been identified yet. Therefore, early detection and prognostic biomarkers are highly desirable for a more rational management of the disease. Hypermethylation of CpG islands is one of the most important epigenetic mechanisms that leads to gene silencing in tumors and has been extensively used for the identification of biomarkers. In this study, we combined rapid subtractive hybridization and microarray analysis in a hierarchical manner to select genes that are putatively reactivated by the demethylating agent 5-aza-2'-deoxycytidine (5Aza-dC) in HNSCC cell lines (FaDu, UM-SCC-14A, UM-SCC-17A, UM-SCC-38A). This combined analysis identified 78 genes, 35 of which were reactivated in at least 2 cell lines and harbored a CpG island at their 5' region. Reactivation of 3 of these 35 genes (CRABP2, MX1, and SLC15A3) was confirmed by quantitative real-time polymerase chain reaction (PCR; fold change, >or=3). Bisulfite sequencing of their CpG islands revealed that they are indeed differentially methylated in the HNSCC cell lines. Using methylation-specific PCR, we detected a higher frequency of CRABP2 (58.1% for region 1) and MX1 (46.3%) hypermethylation in primary HNSCC when compared with lymphocytes from healthy individuals. Finally, absence of the CRABP2 protein was associated with decreased disease-free survival rates, supporting a potential use of CRABP2 expression as a prognostic biomarker for HNSCC patients.

Indexed as

DNA MethylationAzacitidineBiomarkers, TumorCarcinoma, Squamous CellCell Line, TumorCpG IslandsDecitabineEpigenesis, GeneticGene Expression ProfilingGene Expression Regulation, NeoplasticGTP-Binding ProteinsHead and Neck NeoplasmsHumansImmunohistochemistryKaplan-Meier EstimateMyxovirus Resistance ProteinsAzacitidineBiomarkers, TumorDecitabineGTP-Binding ProteinsMyxovirus Resistance ProteinsReceptors, Retinoic Acidretinoic acid binding protein II, cellular

Identifiers

PMID20019841
PMCPMC2794514
OpenAlexW1935082899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.