Evidence map›Paper›PMID 20019802›Full record

ArticlePLoS genetics2009

Alternative splicing events are a late feature of pathology in a mouse model of spinal muscular atrophy.

Dirk Bäumer, Sheena Lee, George Nicholson, Joanna L Davies, Nicholas J Parkinson, Lyndsay M Murray, Thomas H Gillingwater, Olaf Ansorge, Kay E Davies, Kevin Talbot

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 224 citations in OpenAlex.

  1. IndividualLife science alliance · 2026
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  5. Neurodegenerative spliceosomopathies.Frontiers in cell and developmental biology · 2026
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  7. Extracellular Matrix Remodeling in Motor Neuron Diseases.International journal of molecular sciences · 2025
    Review
  8. Review
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  10. Review
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  12. Mitigating aberrant Cdk5 activation alleviates mitochondrial defects and motor neuron disease symptoms in spinal muscular atrophy.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
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  16. A link between agrin signalling and CaScientific reports · 2022
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  17. Perspective on automatedNeural regeneration research · 2022
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  20. Modeling neuromuscular diseases in zebrafish.Frontiers in molecular neuroscience · 2022
    Review

87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Dirk BäumerMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom.
Sheena Lee
George Nicholson
Joanna L Davies
Nicholas J Parkinson
Lyndsay M Murray
Thomas H Gillingwater
Olaf Ansorge
Kay E Davies
Kevin Talbot
University of Oxford · GBUniversity of Edinburgh · GBGenomics (United Kingdom) · GBJohn Radcliffe Hospital · GB

Funding

Medical Research Council MC_U137761449Wellcome Trust 084655
6 · The paper itself

Abstract

Spinal muscular atrophy is a severe motor neuron disease caused by inactivating mutations in the SMN1 gene leading to reduced levels of full-length functional SMN protein. SMN is a critical mediator of spliceosomal protein assembly, and complete loss or drastic reduction in protein leads to loss of cell viability. However, the reason for selective motor neuron degeneration when SMN is reduced to levels which are tolerated by all other cell types is not currently understood. Widespread splicing abnormalities have recently been reported at end-stage in a mouse model of SMA, leading to the proposition that disruption of efficient splicing is the primary mechanism of motor neuron death. However, it remains unclear whether splicing abnormalities are present during early stages of the disease, which would be a requirement for a direct role in disease pathogenesis. We performed exon-array analysis of RNA from SMN deficient mouse spinal cord at 3 time points, pre-symptomatic (P1), early symptomatic (P7), and late-symptomatic (P13). Compared to littermate control mice, SMA mice showed a time-dependent increase in the number of exons showing differential expression, with minimal differences between genotypes at P1 and P7, but substantial variation in late-symptomatic (P13) mice. Gene ontology analysis revealed differences in pathways associated with neuronal development as well as cellular injury. Validation of selected targets by RT-PCR confirmed the array findings and was in keeping with a shift between physiologically occurring mRNA isoforms. We conclude that the majority of splicing changes occur late in SMA and may represent a secondary effect of cell injury, though we cannot rule out significant early changes in a small number of transcripts crucial to motor neuron survival.

Indexed as

Alternative SplicingAnimalsDisease Models, AnimalExonsGene Expression RegulationMiceMotor NeuronsMuscular Atrophy, SpinalProtein IsoformsRNA, MessengerSpinal CordTime FactorsProtein IsoformsRNA, Messenger

Identifiers

PMID20019802
PMCPMC2787017
OpenAlexW2153484644

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.