Evidence map›Paper›PMID 20018753›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Positive selection identifies an in vivo role for FimH during urinary tract infection in addition to mannose binding.

Swaine L Chen, Chia S Hung, Jerome S Pinkner, Jennifer N Walker, Corinne K Cusumano, Zhaoli Li, Julie Bouckaert, Jeffrey I Gordon, Scott J Hultgren

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 1 pooled it
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 1 synthesis or guideline pooled it, 186 citations in OpenAlex.

  1. Pooled it
  2. Article
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  5. Article
  6. Carbapenem-resistantbioRxiv : the preprint server for biology · 2026
    Article
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  11. Review
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  15. Conformational ensembles inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Urinary Tract Infections Caused by UropathogenicInternational journal of molecular sciences · 2023
    Review

53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Swaine L ChenDepartment of Molecular Microbiology, Washington University School of Medicine, 660 South Euclid Avenue, St Louis, MO 63110, USA.
Chia S Hung
Jerome S Pinkner
Jennifer N Walker
Corinne K Cusumano
Zhaoli Li
Julie Bouckaert
Jeffrey I Gordon
Scott J Hultgren
Washington University in St. Louis · USGlobal Viral · USVIB-VUB Center for Structural Biology · BE

Funding

pan-Genome of E.coli in the bladder and gut of women with recurrent UTIP50DK064540 · NIDDK · WASHINGTON UNIVERSITY · PI HULTGREN, SCOTT J. · 2002 to 2017
$17.9M
MOLECULAR BASIS OF E. COLI ADHESINS IN BLADDER DISORDERSR01DK051406 · NIDDK · WASHINGTON UNIVERSITY · PI SCOTT J. HULTGREN · 1997 to 2026
$8.8M
PATHOGENIC FIBER FORMATION IN BACTERIA: STRUCTURAL BASISR01AI048689 · NIAID · WASHINGTON UNIVERSITY · PI HULTGREN, SCOTT J. · 2001 to 2020
$7.6M
CHAPERONE-ASSISTED PILI ASSEMBLY IN PATHOGENIC E. COLIR01AI029549 · NIAID · WASHINGTON UNIVERSITY · PI HULTGREN, SCOTT J., YUAN, PENG · 1991 to 2023
$5.7M
CHAPERONE ASSISTED PILI ASSEMBLY IN PATHOGENIC E COLIR37AI029549 · NIAID · WASHINGTON UNIVERSITY · PI HULTGREN, SCOTT J. · 1999 to 2008
$3.2M
Pathogenic Fiber Formation in Bacteria: Structural BasisR37AI048689 · NIAID · WASHINGTON UNIVERSITY · PI SCOTT J. HULTGREN · 2021 to 2026
$2.9M
Molecular study of genes and pathways in late stages of urinary tract infectionK01DK081620 · NIDDK · WASHINGTON UNIVERSITY · PI CHEN, SWAINE L · 2008 to 2010
$315k
Computational tests of urinary tract infection mechanismF32AI068362 · NIAID · WASHINGTON UNIVERSITY · PI CHEN, SWAINE L · 2006 to 2007
$102k
NIAID NIH HHS AI029549NIAID NIH HHS AI068362NIAID NIH HHS AI48689NIAID NIH HHS F32 AI068362NIAID NIH HHS R01 AI029549NIAID NIH HHS R01 AI048689NIAID NIH HHS R37 AI029549NIAID NIH HHS R37 AI048689NIDDK NIH HHS DK081620NIDDK NIH HHS DK51406NIDDK NIH HHS DK64540NIDDK NIH HHS K01 DK081620NIDDK NIH HHS P50 DK064540NIDDK NIH HHS R01 DK051406
6 · The paper itself

Abstract

FimH, the type 1 pilus adhesin of uropathogenic Escherichia coli (UPEC), contains a receptor-binding domain with an acidic binding pocket specific for mannose. The fim operon, and thus type 1 pilus production, is under transcriptional control via phase variation of an invertible promoter element. FimH is critical during urinary tract infection for mediating colonization and invasion of the bladder epithelium and establishment of intracellular bacterial communities (IBCs). In silico analysis of FimH gene sequences from 279 E. coli strains identified specific amino acids evolving under positive selection outside of its mannose-binding pocket. Mutating two of these residues (A27V/V163A) had no effect on phase variation, pilus assembly, or mannose binding in vitro. However, compared to wild-type, this double mutant strain exhibited a 10,000-fold reduction in mouse bladder colonization 24 h after inoculation and was unable to form IBCs even though it bound normally to mannosylated receptors in the urothelium. In contrast, the single A62S mutation altered phase variation, reducing the proportion of piliated cells, reduced mannose binding 8-fold, and decreased bladder colonization 30-fold in vivo compared to wild-type. A phase-locked ON A62S mutant restored virulence to wild-type levels even though in vitro mannose binding remained impaired. Thus, positive selection analysis of FimH has separated mannose binding from in vivo fitness, suggesting that IBC formation is critical for successful infection of the mammalian bladder, providing support for more general use of in silico positive selection analysis to define the molecular underpinnings of bacterial pathogenesis.

Indexed as

Adhesins, Escherichia coliAmino Acid SubstitutionAnimalsEscherichia coli InfectionsFimbriae ProteinsGenes, BacterialMannoseMiceMice, Inbred C3HModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedMutationPhylogenySelection, GeneticUrinary BladderAdhesins, Escherichia coliFimbriae ProteinsfimH protein, E coliMannose

Identifiers

PMID20018753
PMCPMC2794649
OpenAlexW2139620849

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.