Evidence map›Paper›PMID 20018159›Full record

ArticleAnalytical biochemistry2010

Use of thermal melt curves to assess the quality of enzyme preparations.

Gregory J Crowther, Panqing He, Philip P Rodenbough, Andrew P Thomas, Kuzma V Kovzun, David J Leibly, Janhavi Bhandari, Lisa J Castaneda, Wim G J Hol, Michael H Gelb and 2 more

Abstract read
In one paragraph

Article in Analytical biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Fluorescence-Based Protein Stability Monitoring-A Review.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Catalytic Properties of Caseinolytic Protease Subunit ofMolecules (Basel, Switzerland) · 2022
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Gregory J CrowtherDepartment of Medicine, University of Washington, Seattle, WA 98195, USA. crowther@uw.edu
Panqing He
Philip P Rodenbough
Andrew P Thomas
Kuzma V Kovzun
David J Leibly
Janhavi Bhandari
Lisa J Castaneda
Wim G J Hol
Michael H Gelb
Alberto J Napuli
Wesley C Van Voorhis

Funding

Novel Therapeutics for Class B ProtozoaU01AI077822 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI REED, SHARON L · 2008 to 2012
$6.8M
Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Calcium Dependent Protein Kinase 1 as a drug target for T. gondii and C. parvumR01AI089441 · NIAID · UNIVERSITY OF WASHINGTON · PI MERRITT, ETHAN A, PARSONS, MARILYN · 2010 to 2014
$5.0M
Glycogen Synthase Kinase-3 as a drug target for Trypanosoma bruceiR01AI080625 · NIAID · UNIVERSITY OF WASHINGTON · PI VAN VOORHIS, WESLEY C · 2009 to 2012
$1.5M
NIAID NIH HHS AI067921NIAID NIH HHS AI077822-01NIAID NIH HHS AI080625NIAID NIH HHS P01 AI067921NIAID NIH HHS R01 AI080625NIAID NIH HHS R01 AI089441NIAID NIH HHS U01 AI077822
6 · The paper itself

Abstract

This study sought to determine whether the quality of enzyme preparations can be determined from their melting curves, which may easily be obtained using a fluorescent probe and a standard reverse transcription-polymerase chain reaction (RT-PCR) machine. Thermal melt data on 31 recombinant enzymes from Plasmodium parasites were acquired by incrementally heating them to 90 degrees C and measuring unfolding with a fluorescent dye. Activity assays specific to each enzyme were also performed. Four of the enzymes were denatured to varying degrees with heat and sodium dodecyl sulfate (SDS) prior to the thermal melt and activity assays. In general, melting curve quality was correlated with enzyme activity; enzymes with high-quality curves were found almost uniformly to be active, whereas those with lower quality curves were more varied in their catalytic performance. Inspection of melting curves of bovine xanthine oxidase and Entamoeba histolytica cysteine protease 1 allowed active stocks to be distinguished from inactive stocks, implying that a relationship between melting curve quality and activity persists over a wide range of experimental conditions and species. Our data suggest that melting curves can help to distinguish properly folded proteins from denatured ones and, therefore, may be useful in selecting stocks for further study and in optimizing purification procedures for specific proteins.

Indexed as

AnimalsCattleCysteine ProteasesEntamoeba histolyticaEnzyme AssaysEnzymesFluorescent DyesHot TemperaturePhase TransitionPlasmodiumProtein DenaturationReverse Transcriptase Polymerase Chain ReactionSodium Dodecyl SulfateXanthine OxidaseCysteine ProteasesEnzymesFluorescent DyesSodium Dodecyl SulfateXanthine Oxidase

Identifiers

PMID20018159
PMCPMC3270315

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.