Evidence map›Paper›PMID 20016778›Full record

ArticlePloS one2009

Computer modeling describes gravity-related adaptation in cell cultures.

Ludmil B Alexandrov, Stoyana Alexandrova, Anny Usheva

Abstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ludmil B AlexandrovHarvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA.
Stoyana Alexandrova
Anny Usheva

Funding

Promoter Prediction Using the Opening Profile of DNAR01GM073911 · NIGMS · BETH ISRAEL DEACONESS MEDICAL CENTER · PI USHEVA-SIMIDJIYSKA, ANNY · 2005 to 2009
$1.3M
NIGMS NIH HHS R01 GM073911
6 · The paper itself

Abstract

Questions about the changes of biological systems in response to hostile environmental factors are important but not easy to answer. Often, the traditional description with differential equations is difficult due to the overwhelming complexity of the living systems. Another way to describe complex systems is by simulating them with phenomenological models such as the well-known evolutionary agent-based model (EABM). Here we developed an EABM to simulate cell colonies as a multi-agent system that adapts to hyper-gravity in starvation conditions. In the model, the cell's heritable characteristics are generated and transferred randomly to offspring cells. After a qualitative validation of the model at normal gravity, we simulate cellular growth in hyper-gravity conditions. The obtained data are consistent with previously confirmed theoretical and experimental findings for bacterial behavior in environmental changes, including the experimental data from the microgravity Atlantis and the Hypergravity 3000 experiments. Our results demonstrate that it is possible to utilize an EABM with realistic qualitative description to examine the effects of hypergravity and starvation on complex cellular entities.

Indexed as

Adaptation, PhysiologicalComputer SimulationGravitationModels, BiologicalBacterial ProteinsColony Count, MicrobialEscherichia coliFlagellaGene Expression Regulation, BacterialHypergravityReproducibility of ResultsSigma FactorTime FactorsBacterial ProteinsSigma Factorsigma factor KatF protein, Bacteria

Identifiers

PMID20016778
PMCPMC2790613

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.