Evidence map›Paper›PMID 20015986›Full record

ArticleJournal of virology2010

ICP27 phosphorylation site mutants display altered functional interactions with cellular export factors Aly/REF and TAP/NXF1 but are able to bind herpes simplex virus 1 RNA.

Kara A Corbin-Lickfett, Santos Rojas, Ling Li, Melanie J Cocco, Rozanne M Sandri-Goldin

Abstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 25 citations in OpenAlex.

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  7. TheJournal of virology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kara A Corbin-LickfettDepartment of Microbiology and Molecular Genetics, University of California, Irvine, California 92697-4025, USA.
Santos Rojas
Ling Li
Melanie J Cocco
Rozanne M Sandri-Goldin
University of California, Irvine · US

Funding

Herpes simplex virus gene regulationR37AI021515 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDRI-GOLDIN, ROZANNE M · 2002 to 2011
$3.8M
Domain structure and interactions of HSV-1 ICP27R01AI061397 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDRI-GOLDIN, ROZANNE M · 2004 to 2008
$1.8M
Structural Analysis of the HSV-1 ICP27 proteinF32AI062033 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI CORBIN-LICKFETT, KARA A · 2005 to 2007
$143k
NIAID NIH HHS AI21215NIAID NIH HHS AI61397NIAID NIH HHS F32 AI062033NIAID NIH HHS R01 AI061397NIAID NIH HHS R37 AI021515
6 · The paper itself

Abstract

Herpes simplex virus 1 (HSV-1) protein ICP27 is a multifunctional regulatory protein that is phosphorylated. Phosphorylation can affect protein localization, protein interactions, and protein function. The major sites of ICP27 that are phosphorylated are serine residues 16 and 18, within a CK2 site adjacent to a leucine-rich region required for ICP27 export, and serine 114, within a PKA site in the nuclear localization signal. Viral mutants bearing serine-to-alanine or glutamic acid substitutions at these sites are defective in viral replication and gene expression. To determine which interactions of ICP27 are impaired, we analyzed the subcellular localization of ICP27 and its colocalization with cellular RNA export factors Aly/REF and TAP/NXF1. In cells infected with phosphorylation site mutants, ICP27 was confined to the nucleus even at very late times after infection. ICP27 did not colocalize with Aly/REF or TAP/NXF1, and overexpression of TAP/NXF1 did not promote the export of ICP27 to the cytoplasm. However, in vitro binding experiments showed that mutant ICP27 was able to bind to the same RNA substrates as the wild type. Nuclear magnetic resonance (NMR) analysis of the N terminus of ICP27 from amino acids 1 to 160, compared to mutants with triple substitutions to alanine or glutamic acid, showed that the mutations affected the overall conformation of the N terminus, such that mutant ICP27 was more flexible and unfolded. These results indicate that these changes in the structure of ICP27 altered in vivo protein interactions that occur in the N terminus but did not prevent RNA binding.

Indexed as

Herpesvirus 1, HumanImmediate-Early ProteinsAlanineAmino Acid SubstitutionAnimalsGlutamic AcidHeLa CellsHumansMutagenesis, Site-DirectedNuclear ProteinsNucleocytoplasmic Transport ProteinsPhosphorylationRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, ViralTranscription FactorsAlanineALYREF protein, humanGlutamic AcidICP27 protein, human herpesvirus 1Immediate-Early ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsNXF1 protein, humanRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, ViralTranscription Factors

Identifiers

PMID20015986
PMCPMC2820919
OpenAlexW2042555596

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.