Evidence map›Paper›PMID 20015409›Full record

ArticleBMC gastroenterology2009

Microbial community analysis reveals high level phylogenetic alterations in the overall gastrointestinal microbiota of diarrhoea-predominant irritable bowel syndrome sufferers.

Lotta Krogius-Kurikka, Anna Lyra, Erja Malinen, Johannes Aarnikunnas, Jarno Tuimala, Lars Paulin, Harri Mäkivuokko, Kajsa Kajander, Airi Palva

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in BMC gastroenterology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06532110 (The Role of Gut Microbiota in Chronic GI Diseases), which is not on this map. Cited by 177 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed, 7 pooled it
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06532110 recruitingnot on this mapstarted 2012, after this paper: background citation

The Role of Gut Microbiota in Chronic GI Diseases: A Pilot Study

TypeobservationalSponsorMcMaster UniversityRan2012 to 2026Enrolled260ConditionsMicrobiotaArmsEndoscopy/Colonoscopy
3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 7 syntheses or guidelines pooled it, 303 citations in OpenAlex.

  1. Altered molecular signature of the intestinal microbiota in irritable bowel syndrome patients versus healthy controls: An updated systematic review.Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2026
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117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Lotta Krogius-KurikkaDepartment of Basic Veterinary Sciences, Faculty of Veterinary Medicine, PO Box 66, FI-00014 University of Helsinki, Helsinki, Finland. lotta.krogius@helsinki.fi
Anna Lyra
Erja Malinen
Johannes Aarnikunnas
Jarno Tuimala
Lars Paulin
Harri Mäkivuokko
Kajsa Kajander
Airi Palva
University of Helsinki · FICSC - IT Center for Science (Finland) · FIFinnish Red Cross · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA growing amount of scientific evidence suggests that microbes are involved in the aetiology of irritable bowel syndrome (IBS), and the gastrointestinal (GI) microbiota of individuals suffering from diarrhoea-predominant IBS (IBS-D) is distinguishable from other IBS-subtypes. In our study, the GI microbiota of IBS-D patients was evaluated and compared with healthy controls (HC) by using a high-resolution sequencing method. The method allowed microbial community analysis on all levels of microbial genomic guanine plus cytosine (G+C) content, including high G+C bacteria.

methodsThe collective faecal microbiota composition of ten IBS-D patients was analysed by examining sequences obtained using percent G+C (%G+C) -based profiling and fractioning combined with 16S rRNA gene clone library sequencing of 3267 clones. The IBS-D library was compared with an analogous healthy-control library of 23 subjects. Real-time PCR analysis was used to identify phylotypes belonging to the class Gammaproteobacteria and the order Coriobacteriales.

resultsSignificant differences were found between clone libraries of IBS-D patients and controls. The microbial communities of IBS-D patients were enriched in Proteobacteria and Firmicutes, but reduced in the number of Actinobacteria and Bacteroidetes compared to control. In particular, 16S rDNA sequences belonging to the family Lachnospiraceae within the phylum Firmicutes were in greater abundance in the IBS-D clone library.

conclusionsIn the microbiota of IBS-D sufferers, notable differences were detected among the prominent bacterial phyla (Firmicutes, Actinobacteria, Bacteroidetes, and Proteobacteria) localized within the GI tract.

Indexed as

PhylogenyActinobacteriaAdultBacteroidetesCase-Control StudiesDiarrheaDNA, BacterialFecesFemaleGastrointestinal TractGram-Positive BacteriaHumansIrritable Bowel SyndromeMaleMiddle AgedProteobacteriaDNA, BacterialRNA, Bacterial

Identifiers

PMID20015409
PMCPMC2807867
OpenAlexW2059521692

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.