Evidence map›Paper›PMID 20014342›Full record

ArticleGenesis (New York, N.Y. : 2000)2010

The zebrafish dyrk1b gene is important for endoderm formation.

Gohar Mazmanian, Michael Kovshilovsky, Debbie Yen, Aditya Mohanty, Sudipta Mohanty, Alex Nee, Robert M Nissen

Abstract read
In one paragraph

Article in Genesis (New York, N.Y. : 2000), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Genetic Analysis ofJournal of fungi (Basel, Switzerland) · 2024
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  7. Screen identifies DYRK1B network as mediator of transcription repression on damaged chromatin.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Gohar MazmanianDepartment of Biological Sciences, California State University Los Angeles, 5151 State University Drive, Los Angeles, CA 90032, USA.
Michael Kovshilovsky
Debbie Yen
Aditya Mohanty
Sudipta Mohanty
Alex Nee
Robert M Nissen
California State University Los Angeles · US

Funding

Genetic analysis of vertebrate hindbrain developmentF32HD041826 · NICHD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI NISSEN, ROBERT M · 2002 to 2004
$135k
NICHD NIH HHS F32 HD041826
6 · The paper itself

Abstract

Nodal-signaling is required for specification of mesoderm, endoderm, establishing left-right asymmetry, and craniofacial development. Wdr68 is a WD40-repeat domain-containing protein recently shown to be required for endothelin-1 (edn1) expression and subsequent lower jaw development. Previous reports detected the Wdr68 protein in multiprotein complexes containing mammalian members of the dual-specificity tyrosine-regulated kinase (dyrk) family. Here we describe the characterization of the zebrafish dyrk1b homolog. We report the detection of a physical interaction between Dyrk1b and Wdr68. We also found perturbations of nodal signaling in dyrk1b antisense morpholino knockdown (dyrk1b-MO) animals. Specifically, we found reduced expression of lft1 and lft2 (lft1/2) during gastrulation and a near complete loss of the later asymmetric lft1/2 expression domains. Although wdr68-MO animals did not display lft1/2 expression defects during gastrulation, they displayed a near complete loss of the later asymmetric lft1/2 expression domains. While expression of ndr1 was not substantially effected during gastrulation, ndr2 expression was moderately reduced in dyrk1b-MO animals. Analysis of additional downstream components of the nodal signaling pathway in dyrk1b-MO animals revealed modestly expanded expression of the dorsal axial mesoderm marker gsc while the pan-mesodermal marker bik was largely unaffected. The endodermal markers cas and sox17 were also moderately reduced in dyrk1b-MO animals. Notably, and similar to defects previously reported for wdr68 mutant animals, we also found reduced expression of the pharyngeal pouch marker edn1 in dyrk1b-MO animals. Taken together, these data reveal a role for dyrk1b in endoderm formation and craniofacial patterning in the zebrafish.

Indexed as

AnimalsDNA, AntisenseEmbryo, NonmammalianEndodermGene Expression Regulation, DevelopmentalGene Knockdown TechniquesIn Situ HybridizationIntracellular Signaling Peptides and ProteinsLeft-Right Determination FactorsNuclear ProteinsProtein-Tyrosine KinasesReverse Transcriptase Polymerase Chain ReactionZebrafishZebrafish Proteinsdcaf7 protein, zebrafishDNA, AntisenseDyrk1b protein, zebrafishIntracellular Signaling Peptides and ProteinsLeft-Right Determination Factorslft1 protein, zebrafishndr2 protein, zebrafishNuclear ProteinsProtein-Tyrosine KinasesZebrafish Proteins

Identifiers

PMID20014342
PMCPMC2806492
OpenAlexW2010016278

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.