Evidence map›Paper›PMID 20011104›Full record

SynthesisPLoS genetics2009

A genome-wide association study reveals variants in ARL15 that influence adiponectin levels.

J Brent Richards, Dawn Waterworth, Stephen O'Rahilly, Marie-France Hivert, Ruth J F Loos, John R B Perry, Toshiko Tanaka, Nicholas John Timpson, Robert K Semple, Nicole Soranzo and 57 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in PLoS genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 11 pooled it
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 11 syntheses or guidelines pooled it, 171 citations in OpenAlex.

  1. Pooled it
  2. Pleiotropic genes for metabolic syndrome and inflammation.Molecular genetics and metabolism · 2014
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  19. Cleft palate and minor metabolic disturbances in a mouse global Arl15 gene knockout.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
    Article
  20. Article

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

67 authors at 20 institutions in 8 countries.

J Brent RichardsDepartments of Medicine, Human Genetics, and Epidemiology and Biostatistics, Jewish General Hospital, McGill University, Montréal, Québec, Canada. brent.richards@mcgill.ca
Dawn Waterworth
Stephen O'Rahilly
Marie-France Hivert
Ruth J F Loos
John R B Perry
Toshiko Tanaka
Nicholas John Timpson
Robert K Semple
Nicole Soranzo
Kijoung Song
Nuno Rocha
Elin Grundberg
Josée Dupuis
Jose C Florez
Claudia Langenberg
Inga Prokopenko
Richa Saxena
Robert Sladek
Yurii Aulchenko
David Evans
Gerard Waeber
Jeanette Erdmann
Mary-Susan Burnett
Naveed Sattar
Joseph Devaney
Christina Willenborg
Aroon Hingorani
Jaquelin C M Witteman
Peter Vollenweider
Beate Glaser
Christian Hengstenberg
Luigi Ferrucci
David Melzer
Klaus Stark
John Deanfield
Janina Winogradow
Martina Grassl
Alistair S Hall
Josephine M Egan
John R Thompson
Sally L Ricketts
Inke R König
Wibke Reinhard
Scott Grundy
H-Erich Wichmann
Phil Barter
Robert Mahley
Y Antero Kesaniemi
Daniel J Rader
Muredach P Reilly
Stephen E Epstein
Alexandre F R Stewart
Cornelia M Van Duijn
Heribert Schunkert
Keith Burling
Panos Deloukas
Tomi Pastinen
Nilesh J Samani
Ruth McPherson
George Davey Smith
Timothy M Frayling
Nicholas J Wareham
James B Meigs
Vincent Mooser
Tim D Spector
GIANT Consortium
Medical Research Council · GBUniversity of Regensburg · DEUniversity of Lübeck · DEAddenbrooke's Hospital · GBErasmus MC · NLGlaxoSmithKline (United States) · USMedStar Washington Hospital Center · USPeninsula College of Medicine and Dentistry · GBHarvard University · USKing's College London · GBMassachusetts Institute of Technology · USMcGill University · CANational Institute on Aging · USUniversity Hospital of Lausanne · CHUniversity of Cambridge · GBUniversity of Leicester · GBUniversity of Ottawa · CABoston University · USGladstone Institutes · USJewish General Hospital · CA

Funding

ZD6416 Analgesic--Painful Distal Symmetrical PolyneuropaM01RR001066 · NCRR · MASSACHUSETTS GENERAL HOSPITAL · PI BROWN, EMERY N · 1985 to 2008
$37.4M
Common Genetic Variation and Quantitative Diabetes TraitsR01DK078616 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MEIGS, JAMES B · 2008 to 2014
$5.0M
Epidemiology of Precursors to Type 2 DiabetesK24DK080140 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MEIGS, JAMES B · 2007 to 2016
$1.9M
SLEEP AND ENTRAINMENT OF SCN FUNCTIONR01HL064278 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI STROHL, KINGMAN PERKINS · 1999 to 2002
$871k
Genetic variation in drug targets for type 2 diabetesK23DK065978 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI FLOREZ, JOSE CARLOS · 2004 to 2008
$653k
THE FRAMINGHAM HEART STUDY-N01HC25195-268025195-268025195N01HC025195 · HC · TRUSTEES OF BOSTON UNIVERSITY · PI WOLF, PHILIP A · 2002 to 2006
–
British Heart Foundation MRC PG/07/002Cancer Research UKCIHRMedical Research Council G0600705Medical Research Council G0600717Medical Research Council G0701863Medical Research Council G0800582Medical Research Council G9815508Medical Research Council MC_U106179471Medical Research Council MC_U106188470NCRR NIH HHS 1S10RR163736-01A1NCRR NIH HHS M01 RR001066NCRR NIH HHS M01-RR-01066NHLBI NIH HHS N01 HC025195NHLBI NIH HHS N01-HC-25195NHLBI NIH HHS N02-HL-6-4278NIDDK NIH HHS K23 DK065978NIDDK NIH HHS K23 DK65978NIDDK NIH HHS K24 DK080140NIDDK NIH HHS R01 DK078616The Dunhill Medical Trust R69/0208Wellcome TrustWellcome Trust 078986/Z/06/ZWellcome Trust 080952/Z/06/Z
6 · The paper itself

Abstract

The adipocyte-derived protein adiponectin is highly heritable and inversely associated with risk of type 2 diabetes mellitus (T2D) and coronary heart disease (CHD). We meta-analyzed 3 genome-wide association studies for circulating adiponectin levels (n = 8,531) and sought validation of the lead single nucleotide polymorphisms (SNPs) in 5 additional cohorts (n = 6,202). Five SNPs were genome-wide significant in their relationship with adiponectin (P< or =5x10(-8)). We then tested whether these 5 SNPs were associated with risk of T2D and CHD using a Bonferroni-corrected threshold of P< or =0.011 to declare statistical significance for these disease associations. SNPs at the adiponectin-encoding ADIPOQ locus demonstrated the strongest associations with adiponectin levels (P-combined = 9.2x10(-19) for lead SNP, rs266717, n = 14,733). A novel variant in the ARL15 (ADP-ribosylation factor-like 15) gene was associated with lower circulating levels of adiponectin (rs4311394-G, P-combined = 2.9x10(-8), n = 14,733). This same risk allele at ARL15 was also associated with a higher risk of CHD (odds ratio [OR] = 1.12, P = 8.5x10(-6), n = 22,421) more nominally, an increased risk of T2D (OR = 1.11, P = 3.2x10(-3), n = 10,128), and several metabolic traits. Expression studies in humans indicated that ARL15 is well-expressed in skeletal muscle. These findings identify a novel protein, ARL15, which influences circulating adiponectin levels and may impact upon CHD risk.

Indexed as

Genome-Wide Association StudyAdiponectinCoronary DiseaseDiabetes Mellitus, Type 2FemaleGenetic Predisposition to DiseaseHumansMalePolymorphism, Single NucleotideAdiponectin

Identifiers

PMID20011104
PMCPMC2781107
OpenAlexW2137284096

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.