Evidence map›Paper›PMID 20008104›Full record

ArticleNucleic acids research2010

H2A.Bbd: an X-chromosome-encoded histone involved in mammalian spermiogenesis.

Toyotaka Ishibashi, Andra Li, José M Eirín-López, Ming Zhao, Kristal Missiaen, D Wade Abbott, Marvin Meistrich, Michael J Hendzel, Juan Ausió

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 78 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Protamines and the sperm nuclear basic proteins Pandora's Box of insects.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2024
    Article
  5. Review
  6. Review
  7. SPAG17 mediates nuclear translocation of protamines during spermiogenesis.Frontiers in cell and developmental biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Toyotaka IshibashiDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Andra Li
José M Eirín-López
Ming Zhao
Kristal Missiaen
D Wade Abbott
Marvin Meistrich
Michael J Hendzel
Juan Ausió
Universidade da Coruña · ESUniversity of Alberta · CAUniversity of Victoria · CA

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
NUCLEOPROTEINS IN MAMMALIAN SPERMATOGENESISR01HD016843 · NICHD · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MEISTRICH, MARVIN L. · 1985 to 2006
$2.1M
Canadian Institutes of Health ResearchNCI NIH HHS CA-16672NICHD NIH HHS HD-16843
6 · The paper itself

Abstract

Despite the identification of H2A.Bbd as a new vertebrate-specific replacement histone variant several years ago, and despite the many in vitro structural characterizations using reconstituted chromatin complexes consisting of this variant, the existence of H2A.Bbd in the cell and its location has remained elusive. Here, we report that the native form of this variant is present in highly advanced spermiogenic fractions of mammalian testis at the time when histones are highly acetylated and being replaced by protamines. It is also present in the nucleosomal chromatin fraction of mature human sperm. The ectopically expressed non-tagged version of the protein is associated with micrococcal nuclease-refractory insoluble fractions of chromatin and in mouse (20T1/2) cell line, H2A.Bbd is enriched at the periphery of chromocenters. The exceedingly rapid evolution of this unique X-chromosome-linked histone variant is shared with other reproductive proteins including those associated with chromatin in the mature sperm (protamines) of many vertebrates. This common rate of evolution provides further support for the functional and structural involvement of this protein in male gametogenesis in mammals.

Indexed as

Genes, X-LinkedSpermatogenesisAnimalsCell LineChromatinHeLa CellsHistonesHumansMaleMiceProtein IsoformsSelection, GeneticSpermatozoaTestisChromatinHistonesProtein Isoforms

Identifiers

PMID20008104
PMCPMC2847216
OpenAlexW1994961488

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.