Evidence map›Paper›PMID 20007930›Full record

ArticleAmerican journal of respiratory and critical care medicine2010

A functional haplotype in the 3'untranslated region of TNFRSF1B is associated with tuberculosis in two African populations.

Marlo Möller, Friederike Flachsbart, Andreas Till, Thorsten Thye, Rolf D Horstmann, Christian G Meyer, Ivy Osei, Paul D van Helden, Eileen G Hoal, Stefan Schreiber and 2 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory and critical care medicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. International journal of molecular sciences · 2024
    Article
  3. Research progress on genetic control of host susceptibility to tuberculosis.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2022
    Review
  4. The Research Progress of Host Genes and Tuberculosis Susceptibility.Oxidative medicine and cellular longevity · 2019
    Review
  5. Association of VNTR polymorphism of tumor necrosis factor receptor 2 (Molecular biology research communications · 2017
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Understanding latent tuberculosis: a moving target.Journal of immunology (Baltimore, Md. : 1950) · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Marlo MöllerMolecular Biology and Human Genetics, MRC Centre for Molecular and Cellular Biology and DST/NRF Centre of Excellence for Biomedical TB Research, Stellenbosch University, Stellenbosch, South Africa.
Friederike Flachsbart
Andreas Till
Thorsten Thye
Rolf D Horstmann
Christian G Meyer
Ivy Osei
Paul D van Helden
Eileen G Hoal
Stefan Schreiber
Almut Nebel
Andre Franke
Bernhard Nocht Institute for Tropical Medicine · DEStellenbosch University · ZAGhana Health Service · GH

Funding

Wellcome Trust
6 · The paper itself

Abstract

rationaleSusceptibility to tuberculosis is not only determined by Mycobacterium tuberculosis infection, but also by the genetic component of the host. The pleiotropic cytokine tumor necrosis factor-alpha is essential to control tuberculosis infection, and various tumor necrosis factor family members and their respective receptors may contribute to tuberculosis risk.

objectivesTo investigate four functionally relevant polymorphisms in the tumor necrosis factor receptor 2-encoding gene, tumor necrosis factor receptor superfamily member 1B, for association with tuberculosis susceptibility.

methodsGenotyping of four polymorphisms was performed in independent populations from South Africa (429 cases and 482 control subjects) and Ghana (640 cases and 1,158 control subjects), and the association of the variants with tuberculosis was tested using two case-control association studies. MEASUREMENTS AND MAIN

resultsSingle-point and haplotype analysis in South Africans revealed an association in the 3'untranslated region of the investigated gene. The T allele of rs3397 alone and/or the 3' untranslated region haplotype GTT may confer protection against tuberculosis insofar as both allele and haplotype frequencies were significantly lower in case subjects than in controls. The GTT genotype had previously been shown to increase the decay of tumor necrosis factor receptor 2 messenger ribonucleic acid, and messenger ribonucleic acid destabilization may represent a key molecular mechanism for disease susceptibility. Interestingly, the association signal appeared to be restricted to women. The genetic finding was validated in female participants from Ghana. The combined P value in the haplotype analysis was P = 0.00011.

conclusionsOur finding emphasizes the importance of tumor necrosis factor/tumor necrosis factor receptor-mediated immune responses in the pathogenesis of tuberculosis.

Indexed as

3' Untranslated RegionsAllelesBlack PeopleFemaleGene FrequencyGenetic Association StudiesGenetic Predisposition to DiseaseGenotypeGhanaHaplotypesHumansMalePolymorphism, Single NucleotideReceptors, Tumor Necrosis Factor, Type IISex FactorsSouth Africa3' Untranslated RegionsReceptors, Tumor Necrosis Factor, Type IITNFRSF1B protein, human

Identifiers

PMID20007930
PMCPMC2822974
OpenAlexW1967165033

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.