Evidence map›Paper›PMID 20007682›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2010

The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships.

S Tangphatsornruang, D Sangsrakru, J Chanprasert, P Uthaipaisanwong, T Yoocha, N Jomchai, S Tragoonrung

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
10.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 236 citations in OpenAlex.

  1. Article
  2. Review
  3. Functional Genomics: From Soybean to Legume.International journal of molecular sciences · 2025
    Review
  4. Article
  5. Article
  6. The first complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Complete Chloroplast Genomes ofCurrent genomics · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Comparative Analysis of Chloroplast Genome ofInternational journal of molecular sciences · 2023
    Article
  17. Article
  18. Novel molecular markers forFrontiers in genetics · 2023
    Article
  19. Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

S TangphatsornruangGenome Institute, National Center for Genetic Engineering and Biotechnology, Pathumthani, Thailand. sithichoke.tan@biotec.or.th
D Sangsrakru
J Chanprasert
P Uthaipaisanwong
T Yoocha
N Jomchai
S Tragoonrung
National Center for Genetic Engineering and Biotechnology · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mungbean is an economically important crop which is grown principally for its protein-rich dry seeds. However, genomic research of mungbean has lagged behind other species in the Fabaceae family. Here, we reported the complete chloroplast (cp) genome sequence of mungbean obtained by the 454 pyrosequencing technology. The mungbean cp genome is 151 271 bp in length which includes a pair of inverted repeats (IRs) of 26 474 bp separated by a small single-copy region of 17 427 bp and a large single-copy region of 80 896 bp. The genome contains 108 unique genes and 19 of these genes are duplicated in the IR. Of these, 75 are predicted protein-coding genes, 4 ribosomal RNA genes and 29 tRNA genes. Relative to other plant cp genomes, we observed two distinct rearrangements: a 50-kb inversion between accD/rps16 and rbcL/trnK-UUU, and a 78-kb rearrangement between trnH/rpl14 and rps19/rps8. We detected sequence length polymorphism in the cp homopolymeric regions at the intra- and inter-specific levels in the Vigna species. Phylogenetic analysis demonstrated a close relationship between Vigna and Phaseolus in the phaseolinae subtribe and provided a strong support for a monophyletic group of the eurosid I.

Indexed as

PhylogenyTemperatureAnticodonBase SequenceCodonFabaceaeGenome, ChloroplastHigh-Throughput Screening AssaysMicrosatellite RepeatsMolecular Sequence DataPolymorphism, GeneticSequence Analysis, DNAAnticodonCodon

Identifiers

PMID20007682
PMCPMC2818187
OpenAlexW2126962694

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.