Evidence map›Paper›PMID 20007321›Full record

ArticleThe Journal of biological chemistry2010

Negative autoregulation of GTF2IRD1 in Williams-Beuren syndrome via a novel DNA binding mechanism.

Stephen J Palmer, Nicole Santucci, Jocelyn Widagdo, Sara J Bontempo, Kylie M Taylor, Enoch S E Tay, Jeff Hook, Frances Lemckert, Peter W Gunning, Edna C Hardeman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
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  11. Evolution of general transcription factors.Journal of molecular evolution · 2013
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  16. Review
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  18. Animal models of Williams syndrome.American journal of medical genetics. Part C, Seminars in medical genetics · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Stephen J PalmerDepartment of Anatomy, School of Medical Sciences, The University of New South Wales, Sydney 2052, Australia. s.palmer@unsw.edu.au
Nicole Santucci
Jocelyn Widagdo
Sara J Bontempo
Kylie M Taylor
Enoch S E Tay
Jeff Hook
Frances Lemckert
Peter W Gunning
Edna C Hardeman
UNSW Sydney · AUChildren's Medical Research Institute · AUChildren's Hospital at Westmead · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The GTF2IRD1 gene is of principal interest to the study of Williams-Beuren syndrome (WBS). This neurodevelopmental disorder results from the hemizygous deletion of a region of chromosome 7q11.23 containing 28 genes including GTF2IRD1. WBS is thought to be caused by haploinsufficiency of certain dosage-sensitive genes within the deleted region, and the feature of supravalvular aortic stenosis (SVAS) has been attributed to reduced elastin caused by deletion of ELN. Human genetic mapping data have implicated two related genes GTF2IRD1 and GTF2I in the cause of some the key features of WBS, including craniofacial dysmorphology, hypersociability, and visuospatial deficits. Mice with mutations of the Gtf2ird1 allele show evidence of craniofacial abnormalities and behavioral changes. Here we show the existence of a negative autoregulatory mechanism that controls the level of GTF2IRD1 transcription via direct binding of the GTF2IRD1 protein to a highly conserved region of the GTF2IRD1 promoter containing an array of three binding sites. The affinity for this protein-DNA interaction is critically dependent upon multiple interactions between separate domains of the protein and at least two of the DNA binding sites. This autoregulatory mechanism leads to dosage compensation of GTF2IRD1 transcription in WBS patients. The GTF2IRD1 promoter represents the first established in vivo gene target of the GTF2IRD1 protein, and we use it to model its DNA interaction capabilities.

Indexed as

AllelesAnimalsCell LineComputational BiologyDNAElectrophoretic Mobility Shift AssayFluorescent Antibody TechniqueHumansMiceMice, Mutant StrainsModels, BiologicalMuscle ProteinsMutationNuclear ProteinsProtein BindingProtein Structure, TertiaryDNAGTF2IRD1 protein, humanGtf2ird1 protein, mouseMuscle ProteinsNuclear ProteinsTrans-Activators

Identifiers

PMID20007321
PMCPMC2836076
OpenAlexW2165014900

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.