Evidence map›Paper›PMID 20007317›Full record

ArticleThe Journal of biological chemistry2010

Structural basis for the interaction between yeast Spt-Ada-Gcn5 acetyltransferase (SAGA) complex components Sgf11 and Sus1.

Andrew M Ellisdon, Divyang Jani, Alwin Köhler, Ed Hurt, Murray Stewart

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

  1. Peculiarities of theInternational journal of molecular sciences · 2025
    Article
  2. Article
  3. Review
  4. Article
  5. Molecular Mechanisms of DUBs Regulation in Signaling and Disease.International journal of molecular sciences · 2021
    Review
  6. Review
  7. Article
  8. Sharing the SAGA.Trends in biochemical sciences · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Mechanisms for regulating deubiquitinating enzymes.Protein science : a publication of the Protein Society · 2014
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. A new chapter in the transcription SAGA.Current opinion in structural biology · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Andrew M EllisdonFrom the Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH, United Kingdom and.
Divyang JaniFrom the Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH, United Kingdom and.
Alwin KöhlerBiochemie-Zentrum der Universität Heidelberg, INF328, D-69120 Heidelberg, Germany.
Ed HurtBiochemie-Zentrum der Universität Heidelberg, INF328, D-69120 Heidelberg, Germany.
Murray StewartFrom the Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH, United Kingdom and. Electronic address: ms@mrc-lmb.cam.ac.uk.
Heidelberg University · DEMedical Research Council · GBMRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council MC_U105178939Wellcome Trust
6 · The paper itself

Abstract

Sus1 is a central component of the yeast gene gating machinery, the process by which actively transcribing genes such as GAL1 become associated with nuclear pore complexes. Sus1 is a component of both the SAGA transcriptional co-activator complex and the TREX-2 complex that binds to nuclear pore complexes. TREX-2 contains two Sus1 chains that have an articulated helical hairpin fold, enabling them to wrap around an extended alpha-helix in Sac3, following a helical hydrophobic stripe. In SAGA, Sus1 binds to Sgf11 and has been proposed to provide a link between SAGA and TREX-2. We present here the crystal structure of the complex between Sus1 and the N-terminal region of Sgf11 that forms an extended alpha-helix around which Sus1 wraps in a manner that shares some similarities with the Sus1-Sac3 interface in TREX-2. However, the Sus1-binding site on Sgf11 is somewhat shorter than on Sac3 and is based on a narrower hydrophobic stripe. Engineered mutants that disrupt the Sgf11-Sus1 interaction in vitro confirm the importance of the hydrophobic helical stripe in molecular recognition. Helix alpha1 of the Sus1-articulated hairpin does not bind directly to Sgf11 and adopts a wide range of conformations within and between crystal forms, consistent with the presence of a flexible hinge and also with results from previous extensive mutagenesis studies (Klöckner, C., Schneider, M., Lutz, S., Jani, D., Kressler, D., Stewart, M., Hurt, E., and Köhler, A. (2009) J. Biol. Chem. 284, 12049-12056). A single Sus1 molecule cannot bind Sgf11 and Sac3 simultaneously and this, combined with the structure of the Sus1-Sgf11 complex, indicates that Sus1 forms separate subcomplexes within SAGA and TREX-2.

Indexed as

AcetyltransferasesAmino Acid SequenceBinding, CompetitiveBinding SitesCrystallography, X-RayElectrophoresis, Polyacrylamide GelExodeoxyribonucleasesHydrophobic and Hydrophilic InteractionsModels, MolecularMolecular Sequence DataMutationNuclear ProteinsNucleocytoplasmic Transport ProteinsPorinsProtein BindingProtein Structure, SecondaryAcetyltransferasesExodeoxyribonucleasesNuclear ProteinsNucleocytoplasmic Transport ProteinsPorinsRNA-Binding ProteinsSAC3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeSGF11 protein, S cerevisiaeSus1 protein, S cerevisiaeTrans-ActivatorsTranscription Factors

Identifiers

PMID20007317
PMCPMC2823527
OpenAlexW2147428279

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.