Evidence map›Paper›PMID 20007269›Full record

ArticleJournal of virology2010

Effect of dimerizing domains and basic residues on in vitro and in vivo assembly of Mason-Pfizer monkey virus and human immunodeficiency virus.

Karolína Bohmová, Romana Hadravová, Jitka Stokrová, Roman Tuma, Tomás Ruml, Iva Pichová, Michaela Rumlová

Abstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
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  10. Cryo-electron microscopy of tubular arrays of HIV-1 Gag resolves structures essential for immature virus assembly.Proceedings of the National Academy of Sciences of the United States of America · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Karolína BohmováInstitute of Organic Chemistry and Biochemistry IOCB Research Centre & Gilead Sciences, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10, Prague, Czech Republic.
Romana Hadravová
Jitka Stokrová
Roman Tuma
Tomás Ruml
Iva Pichová
Michaela Rumlová

Funding

GENETICS OF PRIMATE D TYPE RETROVIRUSESR01CA027834 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HUNTER, ERIC · 1985 to 2011
$3.6M
GENETICS OF PRIMATE D TYPE RETROVIRUSESR37CA027834 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HUNTER, ERIC · 1991 to 1999
–
NCI NIH HHS CA 27834NCI NIH HHS R01 CA027834NCI NIH HHS R37 CA027834
6 · The paper itself

Abstract

Assembly of immature retroviral particles is a complex process involving interactions of several specific domains of the Gag polyprotein localized mainly within capsid protein (CA), spacer peptide (SP), and nucleocapsid protein (NC). In the present work we focus on the contribution of NC to the oligomerization of CA leading to assembly of Mason-Pfizer monkey virus (M-PMV) and HIV-1. Analyzing in vitro assembly of substitution and deletion mutants of DeltaProCANC, we identified a "spacer-like" sequence (NC(15)) at the M-PMV NC N terminus. This NC(15) domain is indispensable for the assembly and cannot be replaced with oligomerization domains of GCN4 or CREB proteins. Although the M-PMV NC(15) occupies a position analogous to that of the HIV-1 spacer peptide, it could not be replaced by the latter one. To induce the assembly, both M-PMV NC(15) and HIV-1 SP1 must be followed by a short peptide that is rich in basic residues. This region either can be specific, i.e., derived from the downstream NC sequence, or can be a nonspecific positively charged peptide. However, it cannot be replaced by heterologous interaction domains either from GCN4 or from CREB. In summary, we report here a novel M-PMV spacer-like domain that is functionally similar to other retroviral spacer peptides and contributes to the assembly of immature-virus-like particles.

Indexed as

Amino Acid SequenceAnimalsBase SequenceCell LineDNA PrimersDNA, ViralEscherichia coliHIV-1HumansMason-Pfizer monkey virusMicroscopy, Electron, TransmissionMolecular Sequence DataMutagenesisNucleocapsid ProteinsProtein MultimerizationProtein Structure, TertiaryDNA PrimersDNA, ViralNucleocapsid ProteinsRecombinant Proteins

Identifiers

PMID20007269
PMCPMC2812359

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.