Evidence map›Paper›PMID 20004209›Full record

ArticleJournal of molecular biology2010

Identification of novel contributions to high-affinity glycoprotein-receptor interactions using engineered ligands.

Peter J Coombs, Rebecca Harrison, Samantha Pemberton, Adrián Quintero-Martinez, Simon Parry, Stuart M Haslam, Anne Dell, Maureen E Taylor, Kurt Drickamer

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Peter J CoombsDivision of Molecular Biosciences, Department of Life Sciences, Imperial College, London SW7 2AZ, UK.
Rebecca Harrison
Samantha Pemberton
Adrián Quintero-Martinez
Simon Parry
Stuart M Haslam
Anne Dell
Maureen E Taylor
Kurt Drickamer
Imperial College London · GB

Funding

Biotechnology and Biological Sciences Research Council B19088Biotechnology and Biological Sciences Research Council SF19107Wellcome TrustWellcome Trust 075565
6 · The paper itself

Abstract

Engineered receptor fragments and glycoprotein ligands employed in different assay formats have been used to dissect the basis for the dramatic enhancement of binding of two model membrane receptors, dendritic cell-specific intercellular adhesion molecule 3-grabbing nonintegrin (DC-SIGN) and the macrophage galactose lectin, to glycoprotein ligands compared to simple sugars. These approaches make it possible to quantify the importance of two major factors that combine to enhance the affinity of single carbohydrate-recognition domains (CRDs) for glycoprotein ligands by 100-to 300-fold. First, the presence of extended binding sites within a single CRD can enhance interaction with branched glycans, resulting in increases of fivefold to 20-fold in affinity. Second, presentation of glycans on a glycoprotein surface increases affinity by 15-to 20-fold, possibly due to low-specificity interactions with the surface of the protein or restriction in the conformation of the glycans. In contrast, when solution-phase networking is avoided, enhancement due to binding of multiple branches of a glycan to multiple CRDs in the oligomeric forms of these receptors is minimal and binding of a receptor oligomer to multiple glycans on a single glycoprotein makes only a twofold contribution to overall affinity. Thus, in these cases, multivalent interactions of individual glycoproteins with individual receptor oligomers have a limited role in achieving high affinity. These findings, combined with considerations of membrane receptor geometry, are consistent with the idea that further enhancement of the binding to multivalent glycoprotein ligands requires interaction of multiple receptor oligomers with the ligands.

Indexed as

Cell Adhesion MoleculesDC-Specific ICAM-3 Grabbing NonintegrinGlucansGlycoproteinsLectins, C-TypeProtein BindingReceptors, Cell SurfaceCell Adhesion MoleculesDC-Specific ICAM-3 Grabbing NonintegrinGlucansGlycoproteinsLectins, C-TypeMGL lectin, humanReceptors, Cell Surface

Identifiers

PMID20004209
PMCPMC2824085
OpenAlexW2006952417

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.