Evidence map›Paper›PMID 20004169›Full record

ArticleStructure (London, England : 1993)2009

A role for a specific cholesterol interaction in stabilizing the Apo configuration of the human A(2A) adenosine receptor.

Edward Lyman, Chris Higgs, Byungchan Kim, Dmitry Lupyan, John C Shelley, Ramy Farid, Gregory A Voth

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 118 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Cholesterol Dependent Activity of the Adenosine AMolecules (Basel, Switzerland) · 2022
    Article
  14. Structure-Activity Relationship Studies on Oxazolo[3,4-Journal of medicinal chemistry · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Computer simulations of protein-membrane systems.Progress in molecular biology and translational science · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Edward LymanCenter for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA.
Chris HiggsSchrödinger, L.L.C., 8910 University Center Lane, Suite 270, San Diego, CA 92122, USA.
Byungchan KimSchrödinger, L.L.C., 120 West 45(th) Street, New York, NY 10036, USA.
Dmitry LupyanSchrödinger, L.L.C., 120 West 45(th) Street, New York, NY 10036, USA; Department of Structural and Chemical Biology, Mount Sinai School of Medicine, New York, NY 10029, USA.
John C ShelleySchrodinger, L.L.C., 101 S.W. Main Street, Suite 1300 Portland, OR 97204, USA.
Ramy FaridSchrödinger, L.L.C., 120 West 45(th) Street, New York, NY 10036, USA.
Gregory A VothCenter for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA. Electronic address: voth@hec.utah.edu.
Schrodinger (United States) · USUniversity of Utah · USMount Sinai Hospital · US

Funding

Commercial Software for Modeling of G Protein-Coupled ReceptorsR43GM080726 · NIGMS · SCHRODINGER, INC. · PI FARID, RAMY · 2008 to 2009
$301k
NIGMS NIH HHS R43 GM080726NIGMS NIH HHS R43GM080726
6 · The paper itself

Abstract

The function of G-protein-coupled receptors is tightly modulated by the lipid environment. Long-timescale molecular dynamics simulations (totaling approximately 3 mus) of the A(2A) receptor in cholesterol-free bilayers, with and without the antagonist ZM241385 bound, demonstrate the instability of helix II in the apo receptor in cholesterol-poor membrane regions. We directly observe that the effect of cholesterol binding is to stabilize helix II against a buckling-type deformation, perhaps rationalizing the observation that the A(2A) receptor couples to G protein only in the presence of cholesterol (Zezula and Freissmuth, 2008). The results suggest a mechanism by which the A(2A) receptor may function as a coincidence detector, activating only in the presence of both cholesterol and agonist. We also observed a previously hypothesized conformation of the tryptophan "rotameric switch" on helix VI in which a phenylalanine on helix V positions the tryptophan out of the ligand binding pocket.

Indexed as

ApolipoproteinsCholesterolHumansModels, MolecularProtein BindingProtein ConformationReceptors, Purinergic P1ApolipoproteinsCholesterolReceptors, Purinergic P1

Identifiers

PMID20004169
PMCPMC2796422
OpenAlexW1975932489

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.