Evidence map›Paper›PMID 20004163›Full record

ArticleStructure (London, England : 1993)2009

Comprehensive molecular structure of the eukaryotic ribosome.

Derek J Taylor, Batsal Devkota, Andrew D Huang, Maya Topf, Eswar Narayanan, Andrej Sali, Stephen C Harvey, Joachim Frank

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 155 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Automated Modeling and Validation of Protein Complexes in Cryo-EM Maps.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  12. Article
  13. Article
  14. Joachim Frank's Binding with the Ribosome.Structure (London, England : 1993) · 2019
    Review
  15. Review
  16. Article
  17. Integrative structure modeling with the Integrative Modeling Platform.Protein science : a publication of the Protein Society · 2018
    Article
  18. Article
  19. Article
  20. Structure of the 40S ribosomal subunit ofActa pharmaceutica Sinica. B · 2017
    Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Derek J TaylorWadsworth Center, Empire State Plaza, Albany, NY 12201-0509, USA.
Batsal DevkotaSchool of Biology and Parker H. Petit Institute of Bioengineering and Biosciences, Georgia Institute of Technology, Atlanta, GA 30332-0230, USA.
Andrew D HuangSchool of Biology and Parker H. Petit Institute of Bioengineering and Biosciences, Georgia Institute of Technology, Atlanta, GA 30332-0230, USA.
Maya TopfDepartment of Bioengineering and Therapeutical Sciences, Department of Pharmaceutical Chemistry, and California Institute of Quantitative Biosciences, Mission Bay Byers Hall, University of California at San Francisco, San Francisco, CA 94158, USA.
Eswar NarayananDepartment of Bioengineering and Therapeutical Sciences, Department of Pharmaceutical Chemistry, and California Institute of Quantitative Biosciences, Mission Bay Byers Hall, University of California at San Francisco, San Francisco, CA 94158, USA.
Andrej SaliDepartment of Bioengineering and Therapeutical Sciences, Department of Pharmaceutical Chemistry, and California Institute of Quantitative Biosciences, Mission Bay Byers Hall, University of California at San Francisco, San Francisco, CA 94158, USA.
Stephen C HarveySchool of Biology and Parker H. Petit Institute of Bioengineering and Biosciences, Georgia Institute of Technology, Atlanta, GA 30332-0230, USA.
Joachim FrankHoward Hughes Medical Institute, Department of Biochemistry and Molecular Biology and Department of Biological Sciences, Columbia University, New York, NY 10032, USA. Electronic address: jf2192@columbia.edu.
Georgia Institute of Technology · USQB3 · USColumbia University · USWadsworth Center · US

Funding

SUBPROJECT 5U54GM074945 · NIGMS · SGX PHARMACEUTICALS, INC. · PI BURLEY, STEPHEN KEVIN · 2005 to 2009
$46.2M
Center for Protein Folding Machinery (RMI)PN2EY016525 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2005 to 2015
$33.6M
ZERNIKE PHASE-CONTRAST IMAGINGP41RR001219 · NCRR · WADSWORTH CENTER · PI MANNELLA, CARMEN A. · 1985 to 2010
$11.1M
WEB BASED DOCUMENTATION &TUTORIALS FOR YAMMPP41RR012255 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JOHNSON, JOHN EMIL · 1997 to 2009
$10.4M
IMP: Software for Hybrid Determination of Macromolecular Assembly StructuresR01GM083960 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2008 to 2024
$5.2M
Time-resolved Cryo-EM of Short-lived States in Eukaryotic TranslationR01GM055440 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1997 to 2020
$5.1M
STRUCTURAL ANALYSIS OF MACROMOLECULAR ASSEMBLYR37GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1997 to 2006
$2.8M
Protein Modeling by Satisfaction of Spatial RestraintsR01GM054762 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2001 to 2008
$2.1M
STRUCTURE OF RIBONUCLEIC ACIDSR01GM053827 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HARVEY, STEPHEN C. · 1995 to 2005
$761k
FDA HHS R01 BM083960FDA HHS R01 BM54762Howard Hughes Medical InstituteNCRR NIH HHS P41 RR001219NCRR NIH HHS P41 RR012255NCRR NIH HHS RR12255NEI NIH HHS PN2 EY016525NIGMS NIH HHS GM53827NIGMS NIH HHS GM55440NIGMS NIH HHS R01 GM053827NIGMS NIH HHS R01 GM054762NIGMS NIH HHS R01 GM055440NIGMS NIH HHS R01 GM083960NIGMS NIH HHS R37 GM029169NIGMS NIH HHS R37 GM29169NIGMS NIH HHS U54 GM074945
6 · The paper itself

Abstract

Despite the emergence of a large number of X-ray crystallographic models of the bacterial 70S ribosome over the past decade, an accurate atomic model of the eukaryotic 80S ribosome is still not available. Eukaryotic ribosomes possess more ribosomal proteins and ribosomal RNA than do bacterial ribosomes, which are implicated in extraribosomal functions in the eukaryotic cells. By combining cryo-EM with RNA and protein homology modeling, we obtained an atomic model of the yeast 80S ribosome complete with all ribosomal RNA expansion segments and all ribosomal proteins for which a structural homolog can be identified. Mutation or deletion of 80S ribosomal proteins can abrogate maturation of the ribosome, leading to several human diseases. We have localized one such protein unique to eukaryotes, rpS19e, whose mutations are associated with Diamond-Blackfan anemia in humans. Additionally, we characterize crucial interactions between the dynamic stalk base of the ribosome with eukaryotic elongation factor 2.

Indexed as

Cryoelectron MicroscopyCrystallography, X-RayModels, MolecularMolecular StructureNucleic Acid ConformationRibosomesRNA, RibosomalRNA, Ribosomal

Identifiers

PMID20004163
PMCPMC2814252
OpenAlexW2169590497

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.