Evidence map›Paper›PMID 20003995›Full record

ArticleVirology2010

A rev1-vpu polymorphism unique to HIV-1 subtype A and C strains impairs envelope glycoprotein expression from rev-vpu-env cassettes and reduces virion infectivity in pseudotyping assays.

Matthias H Kraus, Nicholas F Parrish, Katharina S Shaw, Julie M Decker, Brandon F Keele, Jesus F Salazar-Gonzalez, Truman Grayson, David T McPherson, Li-Hua Ping, Jeffrey A Anderson and 4 more

Abstract read
In one paragraph

Article in Virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Unusual Fusion Proteins of HIV-1.Frontiers in microbiology · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Matthias H KrausDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Nicholas F Parrish
Katharina S Shaw
Julie M Decker
Brandon F Keele
Jesus F Salazar-Gonzalez
Truman Grayson
David T McPherson
Li-Hua Ping
Jeffrey A Anderson
Ronald Swanstrom
Carolyn Williamson
George M Shaw
Beatrice H Hahn
University of Alabama at Birmingham · USUniversity of North Carolina at Chapel Hill · USUniversity of Cape Town · ZA

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008361 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YACOUBIAN, TALENE ALENE · 1992 to 2024
$16.8M
Viral and Host Determinants of HIV-1 TransmissionU01AI067854 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F · 2005 to 2005
$14.9M
NCI NIH HHS P30 CA013148NCI NIH HHS P30CA13148NIAID NIH HHS P30 AI027767NIAID NIH HHS U01 AI067854NIGMS NIH HHS T32 GM008361
6 · The paper itself

Abstract

Functional studies of HIV-1 envelope glycoproteins (Envs) commonly include the generation of pseudoviruses, which are produced by co-transfection of rev-vpu-env cassettes with an env-deficient provirus. Here, we describe six Env constructs from transmitted/founder HIV-1 that were defective in the pseudotyping assay, although two produced infectious virions when expressed from their cognate proviruses. All of these constructs exhibited an unusual gene arrangement in which the first exon of rev (rev1) and vpu were in the same reading frame without an intervening stop codon. Disruption of the rev1-vpu fusion gene by frameshift mutation, stop codon, or abrogation of the rev initiation codon restored pseudovirion infectivity. Introduction of the fusion gene into wildtype Env cassettes severely compromised their function. The defect was not due to altered env and rev transcription or a dominant negative effect of the expressed fusion protein, but seemed to be caused by inefficient translation at the env initiation codon. Although the rev1-vpu polymorphism affects Env expression only in vitro, it can cause problems in studies requiring Env complementation, such as analyses of co-receptor usage and neutralization properties, since 3% of subtype A, 20% of subtype C and 5% of CRF01_A/E viruses encode the fusion gene. A solution is to eliminate the rev initiation codon when amplifying rev-vpu-env cassettes since this increases Env expression irrespective of the presence of the polymorphism.

Indexed as

Polymorphism, GeneticAmino Acid SequenceBase SequenceCell Lineenv Gene Products, Human Immunodeficiency VirusHIV-1Human Immunodeficiency Virus ProteinsHumansMolecular Sequence DataProtein BiosynthesisRecombinant Fusion Proteinsrev Gene Products, Human Immunodeficiency VirusViral Regulatory and Accessory ProteinsViroporin Proteinsenv Gene Products, Human Immunodeficiency VirusHuman Immunodeficiency Virus ProteinsRecombinant Fusion Proteinsrev Gene Products, Human Immunodeficiency Virusrev protein, Human Immunodeficiency Virus-1Viral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1

Identifiers

PMID20003995
PMCPMC2822091
OpenAlexW2065475826

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.