Evidence map›Paper›PMID 20003534›Full record

ArticleBMC genomics2009

Transcriptional profiling of trait deterioration in the insect pathogenic nematode Heterorhabditis bacteriophora.

Bishwo N Adhikari, Chin-Yo Lin, Xiaodong Bai, Todd A Ciche, Parwinder S Grewal, Adler R Dillman, John M Chaston, David I Shapiro-Ilan, Anwar L Bilgrami, Randy Gaugler and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. An Intestinal Symbiotic Bacterial Strain ofInternational journal of molecular sciences · 2022
    Article
  3. Article
  4. All the microbiology nematodes can teach us.FEMS microbiology ecology · 2016
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Bishwo N AdhikariDepartment of Biology and Evolutionary Ecology Laboratories, Brigham Young University, Provo, UT 84602, USA. adhikaribn@hotmail.com
Chin-Yo Lin
Xiaodong Bai
Todd A Ciche
Parwinder S Grewal
Adler R Dillman
John M Chaston
David I Shapiro-Ilan
Anwar L Bilgrami
Randy Gaugler
Paul W Sternberg
Byron J Adams
Brigham Young University · USCalifornia Institute of Technology · USRutgers, The State University of New Jersey · USThe Ohio State University · USAgricultural Research Service · USMichigan State University · USUniversity of Wisconsin–Madison · US

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
6 · The paper itself

Abstract

backgroundThe success of a biological control agent depends on key traits, particularly reproductive potential, environmental tolerance, and ability to be cultured. These traits can deteriorate rapidly when the biological control agent is reared in culture. Trait deterioration under laboratory conditions has been widely documented in the entomopathogenic nematode (EPN) Heterorhabditis bacteriophora (Hb) but the specific mechanisms behind these genetic processes remain unclear. This research investigates the molecular mechanisms of trait deterioration of two experimental lines of Hb, an inbred line (L5M) and its original parental line (OHB). We generated transcriptional profiles of two experimental lines of Hb, identified the differentially expressed genes (DEGs) and validated their differential expression in the deteriorated line.

resultsAn expression profiling study was performed between experimental lines L5M and OHB of Hb with probes for 15,220 ESTs from the Hb transcriptome. Microarray analysis showed 1,185 DEGs comprising of 469 down- and 716 up-regulated genes in trait deteriorated nematodes. Analysis of the DEGs showed that trait deterioration involves massive changes of the transcripts encoding enzymes involved in metabolism, signal transduction, virulence and longevity. We observed a pattern of reduced expression of enzymes related to primary metabolic processes and induced secondary metabolism. Expression of sixteen DEGs in trait deteriorated nematodes was validated by quantitative reverse transcription-PCR (qRT-PCR) which revealed similar expression kinetics for all the genes tested as shown by microarray.

conclusionAs the most closely related major entomopathogen to C. elegans, Hb provides an attractive near-term application for using a model organism to better understand interspecies interactions and to enhance our understanding of the mechanisms underlying trait deterioration in biological control agents. This information could also be used to improve the beneficial traits of biological control agents and better understand fundamental aspects of nematode parasitism and mutualism.

Indexed as

Gene Expression ProfilingQuantitative Trait, HeritableAnimalsExpressed Sequence TagsPest Control, BiologicalRhabditoideaRNA, HelminthSignal TransductionRNA, Helminth

Identifiers

PMID20003534
PMCPMC2805696
OpenAlexW2134931085

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.