Evidence map›Paper›PMID 20003402›Full record

ArticleBMC microbiology2009

Transcriptional profile of Pseudomonas syringae pv. phaseolicola NPS3121 in response to tissue extracts from a susceptible Phaseolus vulgaris L. cultivar.

Alejandro Hernández-Morales, Susana De la Torre-Zavala, Enrique Ibarra-Laclette, José Luis Hernández-Flores, Alba Estela Jofre-Garfias, Agustino Martínez-Antonio, Ariel Alvarez-Morales

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  7. The Pbo Cluster fromToxins · 2021
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  12. Transcriptional responses of Pseudomonas syringae to growth in epiphytic versus apoplastic leaf sites.Proceedings of the National Academy of Sciences of the United States of America · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Alejandro Hernández-MoralesDepartamento de Ingeniería Genética, Cinvestav-IPN Unidad Irapuato, Apdo Postal 629, CP 36821, Irapuato, Gto, México. aldolasa@yahoo.com.mx
Susana De la Torre-Zavala
Enrique Ibarra-Laclette
José Luis Hernández-Flores
Alba Estela Jofre-Garfias
Agustino Martínez-Antonio
Ariel Alvarez-Morales
Center for Research and Advanced Studies of the National Polytechnic Institute · MXInstituto Politécnico Nacional · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPseudomonas syringae pv. phaseolicola is a Gram-negative plant-pathogenic bacterium that causes "halo blight" disease of beans (Phaseolus vulgaris L.). This disease affects both foliage and pods, and is a major problem in temperate areas of the world. Although several bacterial genes have been determined as participants in pathogenesis, the overall process still remains poorly understood, mainly because the identity and function of many of the genes are largely unknown. In this work, a genomic library of P. syringae pv. phaseolicola NPS3121 was constructed and PCR amplification of individual fragments was carried out in order to print a DNA microarray. This microarray was used to identify genes that are differentially expressed when bean leaf extracts, pod extracts or apoplastic fluid were added to the growth medium.

resultsTranscription profiles show that 224 genes were differentially expressed, the majority under the effect of bean leaf extract and apoplastic fluid. Some of the induced genes were previously known to be involved in the first stages of the bacterial-plant interaction and virulence. These include genes encoding type III secretion system proteins and genes involved in cell-wall degradation, phaseolotoxin synthesis and aerobic metabolism. On the other hand, most repressed genes were found to be involved in the uptake and metabolism of iron.

conclusionThis study furthers the understanding of the mechanisms involved, responses and the metabolic adaptation that occurs during the interaction of P. syringae pv. phaseolicola with a susceptible host plant.

Indexed as

Gene Expression ProfilingCluster AnalysisCulture MediaDNA, BacterialGene Expression Regulation, BacterialGenes, BacterialGenomic LibraryIronOligonucleotide Array Sequence AnalysisOrnithinePhaseolusPlant ExtractsPseudomonas syringaeVirulenceCulture MediaDNA, BacterialIronOrnithinephaseolotoxinPlant Extracts

Identifiers

PMID20003402
PMCPMC2803797
OpenAlexW2118333720

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.