Evidence map›Paper›PMID 20003319›Full record

ArticleBMC developmental biology2009

Identification of known and novel pancreas genes expressed downstream of Nkx2.2 during development.

Keith R Anderson, Peter White, Klaus H Kaestner, Lori Sussel

Open access · hybridAbstract read
In one paragraph

Article in BMC developmental biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Modelling the endocrine pancreas in health and disease.Nature reviews. Endocrinology · 2019
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  15. Organogenesis and functional genomics of the endocrine pancreas.Cellular and molecular life sciences : CMLS · 2012
    Review
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  17. A small molecule differentiation inducer increases insulin production by pancreatic β cells.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 1 country.

Keith R AndersonDepartment of Biochemistry and Program in Molecular Biology, University of Colorado Health Science Center, Denver, CO 80045, USA.
Peter White
Klaus H Kaestner
Lori Sussel
Columbia University · USNationwide Children's Hospital · USUniversity of Colorado Hospital · USUniversity of Pennsylvania · US

Funding

Coordinating Center for Beta Cell Biology ConsortiumU01DK072473 · NIDDK · VANDERBILT UNIVERSITY · PI MAGNUSON, MARK A · 2005 to 2014
$61.0M
Defining the roles of Nkx2.2 and NeuroD in regulating islet cell fateU01DK072504 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI SUSSEL, LORI · 2005 to 2010
$3.2M
NIDDK NIH HHS 5U01DK072473NIDDK NIH HHS U01 DK072504
6 · The paper itself

Abstract

backgroundThe homeodomain containing transcription factor Nkx2.2 is essential for the differentiation of pancreatic endocrine cells. Deletion of Nkx2.2 in mice leads to misspecification of islet cell types; insulin-expressing beta cells and glucagon-expressing alpha cells are replaced by ghrelin-expressing cells. Additional studies have suggested that Nkx2.2 functions both as a transcriptional repressor and activator to regulate islet cell formation and function. To identify genes that are potentially regulated by Nkx2.2 during the major wave of endocrine and exocrine cell differentiation, we assessed gene expression changes that occur in the absence of Nkx2.2 at the onset of the secondary transition in the developing pancreas.

resultsMicroarray analysis identified 80 genes that were differentially expressed in e12.5 and/or e13.5 Nkx2.2-/- embryos. Some of these genes encode transcription factors that have been previously identified in the pancreas, clarifying the position of Nkx2.2 within the islet transcriptional regulatory pathway. We also identified signaling factors and transmembrane proteins that function downstream of Nkx2.2, including several that have not previously been described in the pancreas. Interestingly, a number of known exocrine genes are also misexpressed in the Nkx2.2-/- pancreas.

conclusionsExpression profiling of Nkx2.2-/- mice during embryogenesis has allowed us to identify known and novel pancreatic genes that function downstream of Nkx2.2 to regulate pancreas development. Several of the newly identified signaling factors and transmembrane proteins may function to influence islet cell fate decisions. These studies have also revealed a novel function for Nkx2.2 in maintaining appropriate exocrine gene expression. Most importantly, Nkx2.2 appears to function within a complex regulatory loop with Ngn3 at a key endocrine differentiation step.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsFemaleHomeobox Protein Nkx-2.2Homeodomain ProteinsMaleMicePancreasTranscription FactorsZebrafish ProteinsHomeobox Protein Nkx-2.2Homeodomain Proteinsnkx2.2b protein, zebrafishNkx2-2 protein, mouseTranscription FactorsZebrafish Proteins

Identifiers

PMID20003319
PMCPMC2799404
OpenAlexW2154056136

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.