Evidence map›Paper›PMID 20000709›Full record

ArticleJournal of the American Chemical Society2010

Multiparameter screening on SlipChip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods.

Liang Li, Wenbin Du, Rustem F Ismagilov

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 93 citations in OpenAlex.

  1. Technical Scale in Biomolecular Crystallization.Advances in biochemical engineering/biotechnology · 2026
    Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array.Acta crystallographica. Section D, Biological crystallography · 2015
    Article
  9. Individually addressable arrays of replica microbial cultures enabled by splitting SlipChips.Integrative biology : quantitative biosciences from nano to macro · 2014
    Article
  10. Article
  11. An overview of biological macromolecule crystallization.International journal of molecular sciences · 2013
    Review
  12. Article
  13. Article
  14. The Protein Maker: an automated system for high-throughput parallel purification.Acta crystallographica. Section F, Structural biology and crystallization communications · 2011
    Article
  15. Structural genomics of infectious disease drug targets: the SSGCID.Acta crystallographica. Section F, Structural biology and crystallization communications · 2011
    Article
  16. Article
  17. Microfluidic technologies for synthetic biology.International journal of molecular sciences · 2011
    Review
  18. Digital PCR on a SlipChip.Lab on a chip · 2010
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Liang LiDepartment of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, 929 East 57th Street, Chicago, Illinois 60637, USA.
Wenbin Du
Rustem F Ismagilov
University of Chicago · US

Funding

Sub-project 5U54GM074961 · NIGMS · EMERALD BIOSTRUCTURES · PI KUHN, PETER · 2005 to 2009
$19.3M
2007 NIH Director's Pioneer Award Program (DP1)DP1OD003584 · OD · UNIVERSITY OF CHICAGO · PI ISMAGILOV, RUSTEM F · 2007 to 2011
$3.9M
Enabling Nanoliter Membrane Protein Crystallization(RMI)R01GM075827 · NIGMS · UNIVERSITY OF CHICAGO · PI ISMAGILOV, RUSTEM F · 2005 to 2009
$1.1M
NCI NIH HHS Y1-CO-1020NIAID NIH HHS HHSN272200700057CNIGMS NIH HHS R01 GM075827NIGMS NIH HHS U54 GM074961NIGMS NIH HHS Y1-GM-1104NIH HHS 1DP1OD003584NIH HHS DP1 OD003584
6 · The paper itself

Abstract

This paper describes two SlipChip-based approaches to protein crystallization: a SlipChip-based free interface diffusion (FID) method and a SlipChip-based composite method that simultaneously performs microbatch and FID crystallization methods in a single device. The FID SlipChip was designed to screen multiple reagents, each at multiple diffusion equilibration times, and was validated by screening conditions for crystallization of two proteins, enoyl-CoA hydratase from Mycobacterium tuberculosis and dihydrofolate reductase/thymidylate synthase from Babesia bovis, against 48 different reagents at five different equilibration times each, consuming 12 microL of each protein for a total of 480 experiments using three SlipChips. The composite SlipChip was designed to screen multiple reagents, each at multiple mixing ratios and multiple equilibration times, and was validated by screening conditions for crystallization of two proteins, enoyl-CoA hydratase from Mycobacterium tuberculosis and dihydrofolate reductase/thymidylate synthase from Babesia bovis. To prevent cross-contamination while keeping the solution in the neck channels for FID stable, the plates of the SlipChip were etched with a pattern of nanowells. This nanopattern was used to increase the contact angle of aqueous solutions on the surface of the silanized glass. The composite SlipChip increased the number of successful crystallization conditions and identified more conditions for crystallization than separate FID and microbatch screenings. Crystallization experiments were scaled up in well plates using conditions identified during the SlipChip screenings, and X-ray diffraction data were obtained to yield the protein structure of dihydrofolate reductase/thymidylate synthase at 1.95 A resolution. This free-interface diffusion approach provides a convenient and high-throughput method of setting up gradients in microfluidic devices and may find additional applications in cell-based assays.

Indexed as

DiffusionBabesia bovisCrystallizationCrystallography, X-RayEnoyl-CoA HydrataseMycobacterium tuberculosisNanotechnologyProteinsTetrahydrofolate DehydrogenaseThymidylate SynthaseEnoyl-CoA HydrataseProteinsTetrahydrofolate DehydrogenaseThymidylate Synthase

Identifiers

PMID20000709
PMCPMC2805062
OpenAlexW2052931250

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.