Evidence map›Paper›PMID 19997645›Full record

ArticlePloS one2009

CS-SELEX generates high-affinity ssDNA aptamers as molecular probes for hepatitis C virus envelope glycoprotein E2.

Fang Chen, Yilan Hu, Dongqing Li, Haidan Chen, Xiao-Lian Zhang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Aptamer-based biosensors for virus protein detection.Trends in analytical chemistry : TRAC · 2022
    Review
  9. Aptamers: A prospective tool for infectious diseases diagnosis.Journal of clinical laboratory analysis · 2022
    Review
  10. Aptamers for Viral Detection and Inhibition.ACS infectious diseases · 2022
    Review
  11. Aptamers for Anti-Viral Therapeutics and Diagnostics.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Article
  14. Aptamer-nanobody based ELASA for detection ofIranian journal of microbiology · 2020
    Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Review
  20. Aptamers against pathogenic microorganisms.Critical reviews in microbiology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Fang ChenState Key Laboratory of Virology, Department of Immunology, Wuhan University School of Medicine, Wuhan, People's Republic of China.
Yilan Hu
Dongqing Li
Haidan Chen
Xiao-Lian Zhang
Wuhan University · CNState Key Laboratory of Virology

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Currently, the development of effective diagnostic reagents as well as treatments against Hepatitis C virus (HCV) remains a high priority. In this study, we have described the development of an alive cell surface--Systematic Evolution of Ligands by Exponential Enrichment (CS-SELEX) technique and screened the functional ssDNA aptamers that specifically bound to HCV envelope surface glycoprotein E2. Through 13 rounds of selection, the CS-SELEX generated high-affinity ssDNA aptamers, and the selected ssDNA aptamer ZE2 demonstrated the highest specificity and affinity to E2-positive cells. HCV particles could be specifically captured and diagnosed using the aptamer ZE2. A good correlation was observed in HCV patients between HCV E2 antigen-aptamer assay and assays for HCV RNA quantities or HCV antibody detection. Moreover, the selected aptamers, especially ZE2, could competitively inhibit E2 protein binding to CD81, an important HCV receptor, and significantly block HCV cell culture (HCVcc) infection of human hepatocytes (Huh7.5.1) in vitro. Our data demonstrate that the newly selected ssDNA aptamers, especially aptamer ZE2, hold great promise for developing new molecular probes, as an early diagnostic reagent for HCV surface antigen, or a therapeutic drug specifically for HCV.

Indexed as

AnimalsAntigens, CDAptamers, NucleotideBase SequenceBinding SitesCell LineCell MembraneFluorescein-5-isothiocyanateGenotypeHepacivirusHepatitis CHepatocytesHumansKineticsMiceMicroscopy, FluorescenceAntigens, CDAptamers, NucleotideCD81 protein, humanCd81 protein, mouseFluorescein-5-isothiocyanateglycoprotein E2, Hepatitis C virusMolecular ProbesRNA, ViralTetraspanin 28Viral Envelope Proteins

Identifiers

PMID19997645
PMCPMC2780912
OpenAlexW2043889858

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.