Evidence map›Paper›PMID 19997561›Full record

ArticlePloS one2009

Identification of MAMDC1 as a candidate susceptibility gene for systemic lupus erythematosus (SLE).

Anna Hellquist, Marco Zucchelli, Cecilia M Lindgren, Ulpu Saarialho-Kere, Tiina M Järvinen, Sari Koskenmies, Heikki Julkunen, Päivi Onkamo, Tiina Skoog, Jaana Panelius and 15 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 10 institutions in 3 countries.

Anna HellquistDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Marco Zucchelli
Cecilia M Lindgren
Ulpu Saarialho-Kere
Tiina M Järvinen
Sari Koskenmies
Heikki Julkunen
Päivi Onkamo
Tiina Skoog
Jaana Panelius
Anne Räisänen-Sokolowski
Taina Hasan
Elisabeth Widen
Iva Gunnarson
Elisabet Svenungsson
Leonid Padyukov
Ghazaleh Assadi
Linda Berglind
Ville-Veikko Mäkelä
Katja Kivinen
Andrew Wong
Deborah S Cunningham Graham
Timothy J Vyse
Mauro D'Amato
Juha Kere
Karolinska Institutet · SEUniversity of Helsinki · FIHammersmith Hospital · GBKarolinska University Hospital · SEHelsinki University Hospital · FICentre for Human Genetics · GBFolkhälsans Forskningscentrum · FIStockholm South General Hospital · SETampere University Hospital · FIWellcome Sanger Institute · GB

Funding

Wellcome Trust 090532
6 · The paper itself

Abstract

backgroundSystemic lupus erythematosus (SLE) is a complex autoimmune disorder with multiple susceptibility genes. We have previously reported suggestive linkage to the chromosomal region 14q21-q23 in Finnish SLE families. PRINCIPAL

findingsGenetic fine mapping of this region in the same family material, together with a large collection of parent affected trios from UK and two independent case-control cohorts from Finland and Sweden, indicated that a novel uncharacterized gene, MAMDC1 (MAM domain containing glycosylphosphatidylinositol anchor 2, also known as MDGA2, MIM 611128), represents a putative susceptibility gene for SLE. In a combined analysis of the whole dataset, significant evidence of association was detected for the MAMDC1 intronic single nucleotide polymorphisms (SNP) rs961616 (P -value = 0.001, Odds Ratio (OR) = 1.292, 95% CI 1.103-1.513) and rs2297926 (P -value = 0.003, OR = 1.349, 95% CI 1.109-1.640). By Northern blot, real-time PCR (qRT-PCR) and immunohistochemical (IHC) analyses, we show that MAMDC1 is expressed in several tissues and cell types, and that the corresponding mRNA is up-regulated by the pro-inflammatory cytokines tumour necrosis factor alpha (TNF-alpha) and interferon gamma (IFN-gamma) in THP-1 monocytes. Based on its homology to known proteins with similar structure, MAMDC1 appears to be a novel member of the adhesion molecules of the immunoglobulin superfamily (IgCAM), which is involved in cell adhesion, migration, and recruitment to inflammatory sites. Remarkably, some IgCAMs have been shown to interact with ITGAM, the product of another SLE susceptibility gene recently discovered in two independent genome wide association (GWA) scans. SIGNIFICANCE: Further studies focused on MAMDC1 and other molecules involved in these pathways might thus provide new insight into the pathogenesis of SLE.

Indexed as

Genetic Predisposition to DiseaseCell LineChromosomes, Human, Pair 14CytokinesGene Expression RegulationGenetic LinkageGenetic LociGPI-Linked ProteinsHumansLupus Erythematosus, SystemicMonocytesNeural Cell Adhesion MoleculesOdds RatioPhylogenyPolymorphism, Single NucleotideRNA, MessengerCytokinesGPI-Linked ProteinsMDGA2 protein, humanNeural Cell Adhesion MoleculesRNA, Messenger

Identifiers

PMID19997561
PMCPMC2785483
OpenAlexW2095268637

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.