Evidence map›Paper›PMID 19995968›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Adaptive strategies of the influenza virus polymerase for replication in humans.

Andrew Mehle, Jennifer A Doudna

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 252 papers.

0numbers the graph read from it
0cells of the map it votes in
252citing papers in PubMed
18.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

252 citing papers in PubMed, 392 citations in OpenAlex.

  1. Substitutions affecting the HA-NA-receptor balance preceded the emergence of the pandemic 2009 H1N1 virus.Proceedings of the National Academy of Sciences of the United States of America · 2026
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192 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Andrew MehleDepartments of Molecular and Cell Biology, Howard Hughes Medical Institute, University of California, Berkeley, CA 94705, USA.
Jennifer A Doudna
Howard Hughes Medical Institute · US

Funding

Regulating Influenza Polymerase Structure and Function by PhosphorylationK99GM088484 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MEHLE, ANDREW · 2009 to 2010
$180k
Structure and activity of a cellular IRES elementF32GM077931 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MEHLE, ANDREW · 2006 to 2008
$145k
Howard Hughes Medical InstituteNIGMS NIH HHS F32 GM077931NIGMS NIH HHS F32GM077931NIGMS NIH HHS K99 GM088484NIGMS NIH HHS K99GM088484
6 · The paper itself

Abstract

Transmission of influenza viruses into the human population requires surmounting barriers to cross-species infection. Changes in the influenza polymerase overcome one such barrier. Viruses isolated from birds generally contain polymerases with the avian-signature glutamic acid at amino acid 627 in the PB2 subunit. These polymerases display restricted activity in human cells. An adaptive change in this residue from glutamic acid to the human-signature lysine confers high levels of polymerase activity in human cells. This mutation permits escape from a species-specific restriction factor that targets polymerases from avian viruses. A 2009 swine-origin H1N1 influenza A virus recently established a pandemic infection in humans, even though the virus encodes a PB2 with the restrictive glutamic acid at amino acid 627. We show here that the 2009 H1N1 virus has acquired second-site suppressor mutations in its PB2 polymerase subunit that convey enhanced polymerase activity in human cells. Introduction of this polymorphism into the PB2 subunit of a primary avian isolate also increased polymerase activity and viral replication in human and porcine cells. An alternate adaptive strategy has also been identified, whereby introduction of a human PA subunit into an avian polymerase overcomes restriction in human cells. These data reveal a strategy used by the 2009 H1N1 influenza A virus and identify other pathways by which avian and swine-origin viruses may evolve to enhance replication, and potentially pathogenesis, in humans.

Indexed as

AnimalsBirdsCell LineHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanMutationPolymorphism, GeneticProtein SubunitsRNA-Dependent RNA PolymeraseSpecies SpecificitySwineVirus ReplicationProtein SubunitsRNA-Dependent RNA Polymerase

Identifiers

PMID19995968
PMCPMC2789757
OpenAlexW2100985160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.