Evidence map›Paper›PMID 19995736›Full record

ArticleMolecular plant2009

Molecular characterization of the Calvin cycle enzyme phosphoribulokinase in the stramenopile alga Vaucheria litorea and the plastid hosting mollusc Elysia chlorotica.

Mary E Rumpho, Sirisha Pochareddy, Jared M Worful, Elizabeth J Summer, Debashish Bhattacharya, Karen N Pelletreau, Mary S Tyler, Jungho Lee, James R Manhart, Kara M Soule

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Effect of static magnetic field on marine molluscFrontiers in molecular biosciences · 2022
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  10. The making of a photosynthetic animal.The Journal of experimental biology · 2011
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Mary E RumphoDepartment of Biochemistry, Microbiology and Molecular Biology, 5735 Hitchner Hall, University of Maine, Orono, ME 04469, USA. mrumpho@umit.maine.edu
Sirisha Pochareddy
Jared M Worful
Elizabeth J Summer
Debashish Bhattacharya
Karen N Pelletreau
Mary S Tyler
Jungho Lee
James R Manhart
Kara M Soule
University of Maine · USTexas A&M University · USRutgers, The State University of New Jersey · USSeoul National University · KR

Funding

Developing genomic resources:the toxic dinoflagellateR01ES013679 · NIEHS · UNIVERSITY OF IOWA · PI BHATTACHARYA, DEBASHISH · 2006 to 2008
$1.1M
NIEHS NIH HHS R01 ES013679NIEHS NIH HHS R01ES013679
6 · The paper itself

Abstract

Phosphoribulokinase (PRK), a nuclear-encoded plastid-localized enzyme unique to the photosynthetic carbon reduction (Calvin) cycle, was cloned and characterized from the stramenopile alga Vaucheria litorea. This alga is the source of plastids for the mollusc (sea slug) Elysia chlorotica which enable the animal to survive for months solely by photoautotrophic CO2 fixation. The 1633-bp V. litorea prk gene was cloned and the coding region, found to be interrupted by four introns, encodes a 405-amino acid protein. This protein contains the typical bipartite target sequence expected of nuclear-encoded proteins that are directed to complex (i.e. four membrane-bound) algal plastids. De novo synthesis of PRK and enzyme activity were detected in E. chlorotica in spite of having been starved of V. litorea for several months. Unlike the algal enzyme, PRK in the sea slug did not exhibit redox regulation. Two copies of partial PRK-encoding genes were isolated from both sea slug and aposymbiotic sea slug egg DNA using PCR. Each copy contains the nucleotide region spanning exon 1 and part of exon 2 of V. litorea prk, including the bipartite targeting peptide. However, the larger prk fragment also includes intron 1. The exon and intron sequences of prk in E. chlorotica and V. litorea are nearly identical. These data suggest that PRK is differentially regulated in V. litorea and E. chlorotica and at least a portion of the V. litorea nuclear PRK gene is present in sea slugs that have been starved for several months.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsBase SequenceChlorophytaLikelihood FunctionsMolecular Sequence DataMolluscaPhosphotransferases (Alcohol Group Acceptor)PhotosynthesisPlant ProteinsPlantsSequence AlignmentSequence Homology, Amino AcidSequence Homology, Nucleic AcidphosphoribulokinasePhosphotransferases (Alcohol Group Acceptor)Plant ProteinsAlgaCalvin cycleElysia chloroticakleptoplastmolluscphosphoribulokinasephotosynthesisplastidredox regulationstramenopilesymbiosisVaucheria litorea

Identifiers

PMID19995736
PMCPMC2782795
OpenAlexW2012126665

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.