Evidence map›Paper›PMID 19969539›Full record

ArticleNucleic acids research2010

Chain and conformation stability of solid-state DNA: implications for room temperature storage.

Jacques Bonnet, Marthe Colotte, Delphine Coudy, Vincent Couallier, Joseph Portier, Bénédicte Morin, Sophie Tuffet

Open access · goldAbstract readValidation Study
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 167 citations in OpenAlex.

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  12. Dibenzo[International journal of molecular sciences · 2023
    Review
  13. DNA Data Storage.Biotech (Basel (Switzerland)) · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 1 country.

Jacques BonnetUniversité de Bordeaux-plateforme Génomique Fonctionnelle, Institut Bergonié-INSERM U916 VINCO, Bordeaux, France. bonnet-j@bergonie.org
Marthe Colotte
Delphine Coudy
Vincent Couallier
Joseph Portier
Bénédicte Morin
Sophie Tuffet
Plateforme Technologique d'Innovation Biomédicale · FRGenopole (France) · FRInserm · FRInstitut de Chimie de la Matière Condensée de Bordeaux · FRInstitut de Mathématiques de Bordeaux · FRInstitut des Sciences Moléculaires · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is currently wide interest in room temperature storage of dehydrated DNA. However, there is insufficient knowledge about its chemical and structural stability. Here, we show that solid-state DNA degradation is greatly affected by atmospheric water and oxygen at room temperature. In these conditions DNA can even be lost by aggregation. These are major concerns since laboratory plastic ware is not airtight. Chain-breaking rates measured between 70 degrees C and 140 degrees C seemed to follow Arrhenius' law. Extrapolation to 25 degrees C gave a degradation rate of about 1-40 cuts/10(5) nucleotides/century. However, these figures are to be taken as very tentative since they depend on the validity of the extrapolation and the positive or negative effect of contaminants, buffers or additives. Regarding the secondary structure, denaturation experiments showed that DNA secondary structure could be preserved or fully restored upon rehydration, except possibly for small fragments. Indeed, below about 500 bp, DNA fragments underwent a very slow evolution (almost suppressed in the presence of trehalose) which could end in an irreversible denaturation. Thus, this work validates using room temperature for storage of DNA if completely protected from water and oxygen.

Indexed as

Preservation, BiologicalTemperature8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDNAHot TemperatureHumidityKineticsNucleic Acid ConformationWater8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDNAWater

Identifiers

PMID19969539
PMCPMC2836546
OpenAlexW2107762567

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.