ArticleNucleic acids research2010
H-DBAS: human-transcriptome database for alternative splicing: update 2010.
Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Polyadenylate-binding protein cytoplasmic 1 mediates alternative splicing events of immune-related genes in gastric cancer cells.Experimental biology and medicine (Maywood, N.J.) · 2022Article
- Serum miRNAs are differentially altered by ethanol and caffeine consumption in rats.Toxicology research · 2019Article
- Conservation, evolution, and regulation of splicing during prefrontal cortex development in humans, chimpanzees, and macaques.RNA (New York, N.Y.) · 2018Article
- ASpedia: a comprehensive encyclopedia of human alternative splicing.Nucleic acids research · 2018Article
- Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation.Molecular cell · 2017Article
- Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond.Briefings in bioinformatics · 2016Article
- The Functional Human C-Terminome.PloS one · 2016Article
- Methylxanthines Increase Expression of the Splicing Factor SRSF2 by Regulating Multiple Post-transcriptional Mechanisms.The Journal of biological chemistry · 2015Article
- Biological databases for human research.Genomics, proteomics & bioinformatics · 2015Review
- Novel transcription factor variants through RNA-sequencing: the importance of being "alternative".International journal of molecular sciences · 2015Article
- CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics.Nucleic acids research · 2015Article
- Statistical and Computational Methods for High-Throughput Sequencing Data Analysis of Alternative Splicing.Statistics in biosciences · 2013Article
- Function of alternative splicing.Gene · 2013Review
- Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues.F1000Research · 2013Article
- H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.Nucleic acids research · 2013Article
- Widespread splicing changes in human brain development and aging.Molecular systems biology · 2013Article
- Alternative splicing for diseases, cancers, drugs, and databases.TheScientificWorldJournal · 2013Review
- Inferring transcript phylogenies.BMC bioinformatics · 2012Article
- Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication.Genome research · 2011Article
- ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.Nucleic acids research · 2011Article
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7 authors.
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No grant is acknowledged in the PubMed record.
Abstract
H-DBAS (http://h-invitational.jp/h-dbas/) is a specialized database for human alternative splicing (AS) based on H-Invitational full-length cDNAs. In this update, for better annotations of AS events, we correlated RNA-Seq tag information to the AS exons and splice junctions. We generated a total of 148,376,598 RNA-Seq tags from RNAs extracted from cytoplasmic, nuclear and polysome fractions. Analysis of the RNA-Seq tags allowed us to identify 90,900 exons that are very likely to be used for protein synthesis. On the other hand, 254 AS junctions of human RefSeq transcripts are unique to nuclear RNA and may not have any translational consequences. We also present a new comparative genomics viewer so that users can empirically understand the evolutionary turnover of AS. With the unique experimental data closely connected with intensively curated cDNA information, H-DBAS provides a unique platform for the analysis of complex AS.
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