Evidence map›Paper›PMID 19968906›Full record

ReviewThe Proceedings of the Nutrition Society2010

Plenary Lecture 2: Transcription factors, regulatory elements and nutrient-gene communication.

Robert J Cousins, Tolunay B Aydemir, Louis A Lichten

Open access · bronzeAbstract readReview
In one paragraph

Review in The Proceedings of the Nutrition Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Impact of zinc metabolism on innate immune function in the setting of sepsis.International journal for vitamin and nutrition research. Internationale Zeitschrift fur Vitamin- und Ernahrungsforschung. Journal international de vitaminologie et de nutrition · 2010
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Robert J CousinsCenter for Nutritional Sciences, Food Science and Human Nutrition Department, College of Agricultural and Life Sciences and Department of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, Florida, USA. cousins@ufl.edu
Tolunay B Aydemir
Louis A Lichten
University of Florida · US

Funding

ZINC AND THE SYNTHESIS OF ZINC BINDING PROTEINSR01DK031127 · NIDDK · UNIVERSITY OF FLORIDA · PI COUSINS, ROBERT J · 1986 to 2009
$2.9M
Function of Metal Transporter ZIP14 as Regulated by Proinflammatory StimuliR01DK094244 · NIDDK · UNIVERSITY OF FLORIDA · PI COUSINS, ROBERT J · 2011 to 2020
$2.9M
Development of Drugs Acting at Ion ChannelsZ01DK031127 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI JACOBSON, KENNETH ALAN · 2007 to 2008
$385k
Zinc and the Synthesis of Binding ProteinsR56DK031127 · NIDDK · UNIVERSITY OF FLORIDA · PI COUSINS, ROBERT J · 2010 to 2010
$325k
ZINC AND THE SYTHESIS OF ZINC BINDING PROTEINSR37DK031127 · NIDDK · UNIVERSITY OF FLORIDA · PI COUSINS, ROBERT J · 1992 to 1999
–
Intramural NIH HHS Z01 DK031127NIDDK NIH HHS R01 DK031127NIDDK NIH HHS R01 DK094244NIDDK NIH HHS R37 DK031127NIDDK NIH HHS R56 DK031127
6 · The paper itself

Abstract

Dramatic advances have been made in the understanding of the differing molecular mechanisms used by nutrients to regulate genes that are essential for their biological roles to carry out normal metabolism. Classical studies have focused on nutrients as ligands to activate specific transcription factors. New interest has focused on histone acetylation as a process for either global or limited gene activation and is the first mechanism to be discussed. Nuclear ATP-citrate lyase generates acetyl-CoA, which has been shown to have a role in the activation of specific genes via selective histone acetylation. Transcription factor acetylation may provide a second mode of control of nutrient-responsive gene transcription. The third mechanism relates to the availability of response elements within chromatin, which as well as the location of the elements in the gene may allow or prevent transcription. A fourth mechanism involves intracellular transport of Zn ions, which can orchestrate localized enzyme inhibition-activation. This process in turn influences signalling molecules that regulate gene expression. The examples provided in the present review point to a new level of complexity in understanding nutrient-gene communication.

Indexed as

DietFoodGene ExpressionGene Expression RegulationRegulatory Elements, TranscriptionalAcetylationAcetyl Coenzyme AATP Citrate (pro-S)-LyaseCell NucleusChromatinEnzyme ActivationGenesHistonesLigandsMetabolic Networks and PathwaysResponse ElementsAcetyl Coenzyme AATP Citrate (pro-S)-LyaseChromatinHistonesLigandsTranscription FactorsZinc

Identifiers

PMID19968906
PMCPMC3790273
OpenAlexW2157478170

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.