Evidence map›Paper›PMID 19966299›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

A beta-catenin/TCF-coordinated chromatin loop at MYC integrates 5' and 3' Wnt responsive enhancers.

Gregory S Yochum, Colette M Sherrick, Mary Macpartlin, Richard H Goodman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 95 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Menin in Cancer.Genes · 2024
    Review
  6. DLK1/DIO3 locus upregulation by a β-catenin-dependent enhancer drives cell proliferation and liver tumorigenesis.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  7. Chromatin and DNA Dynamics in Mouse Models of Liver Cancers.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
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  14. Review
  15. Article
  16. Review
  17. Review
  18. Cas9 Mediated Correction ofOncoTargets and therapy · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Gregory S YochumVollum Institute and Division of Hematology and Medical Oncology, Oregon Health & Science University, Portland, OR 97239, USA. gsy3@psu.edu
Colette M Sherrick
Mary Macpartlin
Richard H Goodman
Vollum Institute · USOregon Health & Science University · US

Funding

c-Myc transcription in intestinal growth, differentiation, and carcinogenesisR01DK080805 · NIDDK · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI YOCHUM, GREGORY S. · 2008 to 2012
$1.5M
NIDDK NIH HHS R01 DK080805
6 · The paper itself

Abstract

Aberrant MYC gene expression by the Wnt/beta-catenin pathway is implicated in colorectal carcinogenesis. Wnt/beta-catenin signaling stimulates association of the beta-catenin coactivator complex with two Wnt responsive enhancers (WREs) located in close proximity to MYC gene boundaries. Each enhancer directly binds members of the TCF/Lef family of transcription factors that, in turn, recruit beta-catenin. In a previous report, we showed that the downstream MYC enhancer (MYC 3' WRE) cooperated with the upstream enhancer (MYC 5' WRE) to activate expression of a heterologous reporter gene in response to Wnt/beta-catenin and mitogen signaling. Here we use chromatin conformation capture (3C) to show that the MYC 5' and 3' WREs are juxtaposed at the genomic MYC locus during active transcription. This MYC 5'3' chromatin loop is present in HCT116 human colorectal cancer cells that contain high levels of nuclear beta-catenin and is absent in HEK293 cells that contain trace amounts of nuclear beta-catenin. Depletion of functional beta-catenin/TCF complexes blocks formation of the MYC 5'3 chromatin loop. Furthermore, we find that the chromatin loop is absent in quiescent cells, but is rapidly and transiently induced by serum mitogens in a beta-catenin-dependent manner. Thus, we propose that a distinct chromatin architecture coordinated by beta-catenin/TCF-bound WREs accompanies transcriptional activation of MYC gene expression.

Indexed as

Enhancer Elements, Geneticbeta CateninCell LineChromatinGene ExpressionHCT116 CellsHumansLymphoid Enhancer-Binding Factor 1Nucleic Acid ConformationProto-Oncogene Proteins c-mycSignal TransductionTCF Transcription FactorsWnt Proteinsbeta CateninChromatinLEF1 protein, humanLymphoid Enhancer-Binding Factor 1Proto-Oncogene Proteins c-mycTCF Transcription FactorsWnt Proteins

Identifiers

PMID19966299
PMCPMC2806753
OpenAlexW2058549057

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.