Evidence map›Paper›PMID 19966279›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Binding of a potent small-molecule inhibitor of six-helix bundle formation requires interactions with both heptad-repeats of the RSV fusion protein.

Dirk Roymans, Hendrik L De Bondt, Eric Arnoult, Peggy Geluykens, Tom Gevers, Marcia Van Ginderen, Nick Verheyen, Hidong Kim, Rudy Willebrords, Jean-François Bonfanti and 4 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

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  15. Review
  16. Respiratory syncytial virus entry and how to block it.Nature reviews. Microbiology · 2019
    Review
  17. Small molecule inhibits respiratory syncytial virus entry and infection by blocking the interaction of the viral fusion protein with the cell membrane.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Dirk RoymansTibotec BVBA, B-2800 Mechelen, Belgium. droymans@its.jnj.com
Hendrik L De Bondt
Eric Arnoult
Peggy Geluykens
Tom Gevers
Marcia Van Ginderen
Nick Verheyen
Hidong Kim
Rudy Willebrords
Jean-François Bonfanti
Wouter Bruinzeel
Maxwell D Cummings
Herman van Vlijmen
Koen Andries

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Six-helix bundle (6HB) formation is an essential step for many viruses that rely on a class I fusion protein to enter a target cell and initiate replication. Because the binding modes of small molecule inhibitors of 6HB formation are largely unknown, precisely how they disrupt 6HB formation remains unclear, and structure-based design of improved inhibitors is thus seriously hampered. Here we present the high resolution crystal structure of TMC353121, a potent inhibitor of respiratory syncytial virus (RSV), bound at a hydrophobic pocket of the 6HB formed by amino acid residues from both HR1 and HR2 heptad-repeats. Binding of TMC353121 stabilizes the interaction of HR1 and HR2 in an alternate conformation of the 6HB, in which direct binding interactions are formed between TMC353121 and both HR1 and HR2. Rather than completely preventing 6HB formation, our data indicate that TMC353121 inhibits fusion by causing a local disturbance of the natural 6HB conformation.

Indexed as

Amino Acid SequenceAntiviral AgentsBenzimidazolesCell FusionCrystallography, X-RayHeLa CellsHumansMembrane FusionModels, MolecularMolecular Sequence DataMolecular StructureProtein Structure, SecondaryPyridinesRepetitive Sequences, Amino AcidRespiratory Syncytial Virus, HumanSequence Alignment2-(6-((2-(3-hydroxypropyl)-5-methylphenylamino)methyl)-2-(3-morpholin-4-ylpropylamino)benzoimidazol-1-ylmethyl)-6-methylpyridin-3-olAntiviral AgentsBenzimidazolesPyridinesViral Fusion Proteins

Identifiers

PMID19966279
PMCPMC2806771

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.