Evidence map›Paper›PMID 19966010›Full record

ArticleJournal of bacteriology2010

Glycerol is metabolized in a complex and strain-dependent manner in Enterococcus faecalis.

Alain Bizzini, Chen Zhao, Aurélie Budin-Verneuil, Nicolas Sauvageot, Jean-Christophe Giard, Yanick Auffray, Axel Hartke

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 81 citations in OpenAlex.

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  16. Adaptive Laboratory Evolution ofInternational journal of molecular sciences · 2019
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  17. Review
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  19. Transcriptome Changes ofFrontiers in microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Alain BizziniLaboratoire de Microbiologie de l'Environnement, Université de Caen, EA956 USC INRA2017 IFR 146, 14032 Caen Cedex, France.
Chen Zhao
Aurélie Budin-Verneuil
Nicolas Sauvageot
Jean-Christophe Giard
Yanick Auffray
Axel Hartke
Université de Caen Normandie · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterococcus faecalis is equipped with two pathways of glycerol dissimilation. Glycerol can either first be phosphorylated by glycerol kinase and then oxidized by glycerol-3-phosphate oxidase (the glpK pathway) or first be oxidized by glycerol dehydrogenase and then phosphorylated by dihydroxyacetone kinase (the dhaK pathway). Both pathways lead to the formation of dihydroxyacetone phosphate, an intermediate of glycolysis. It was assumed that the glpK pathway operates during aerobiosis and that the dhaK pathway operates under anaerobic conditions. Because this had not been analyzed by a genetic study, we constructed mutants of strain JH2-2 affected in both pathways. The growth of these mutants on glycerol under aerobic and anaerobic conditions was monitored. In contrast to the former model, results strongly suggest that glycerol is catabolized simultaneously by both pathways in the E. faecalis JH2-2 strain in the presence of oxygen. In accordance with the former model, glycerol is metabolized by the dhaK pathway under anaerobic conditions. Comparison of different E. faecalis isolates revealed an impressive diversity of growth behaviors on glycerol. Analysis by BLAST searching and real-time reverse transcriptase PCR revealed that this diversity is based not on different gene contents but rather on differences in gene expression. Some strains used preferentially the glpK pathway whereas others probably exclusively the dhaK pathway under aerobic conditions. Our results demonstrate that the species E. faecalis cannot be represented by only one model of aerobic glycerol catabolism.

Indexed as

AerobiosisAnaerobiosisEnterococcus faecalisGlycerolGlycerolphosphate DehydrogenaseHydrogen PeroxideReverse Transcriptase Polymerase Chain ReactionSequence DeletionSignal TransductionSugar Alcohol DehydrogenasesGlycerolglycerol-3-phosphate oxidaseglycerol dehydrogenaseGlycerolphosphate DehydrogenaseHydrogen PeroxideSugar Alcohol Dehydrogenases

Identifiers

PMID19966010
PMCPMC2812454
OpenAlexW2095659555

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.