Evidence map›Paper›PMID 19965908›Full record

ArticleHuman molecular genetics2010

Allele-specific CDH1 downregulation and hereditary diffuse gastric cancer.

Hugo Pinheiro, Renata Bordeira-Carriço, Susana Seixas, Joana Carvalho, Janine Senz, Patrícia Oliveira, Patrícia Inácio, Leonor Gusmão, Jorge Rocha, David Huntsman and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
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  3. Advanced biomedical research · 2023
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  6. Cancers · 2021
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  7. TheCancers · 2021
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  8. Genetic and Epigenetic Alterations ofPharmaceuticals (Basel, Switzerland) · 2021
    Article
  9. Article
  10. Article
  11. Review
  12. Monoallelic expression in melanoma.Journal of translational medicine · 2019
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Characterizing MetastaticInternational journal of molecular sciences · 2017
    Article
  18. A central role for cadherin signaling in cancer.Experimental cell research · 2017
    Review
  19. Historical Perspective on Familial Gastric Cancer.Cellular and molecular gastroenterology and hepatology · 2017
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Hugo PinheiroInstitute of Molecular Pathology and Immunology, University of Porto (IPATIMUP), Porto 4200-465, Portugal.
Renata Bordeira-Carriço
Susana Seixas
Joana Carvalho
Janine Senz
Patrícia Oliveira
Patrícia Inácio
Leonor Gusmão
Jorge Rocha
David Huntsman
Raquel Seruca
Carla Oliveira
Universidade do Porto · PTBC Cancer Agency · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hereditary diffuse gastric cancer (HDGC) is an autosomal dominant cancer susceptibility syndrome characterized by early-onset diffuse gastric cancer (DGC) and lobular breast cancer. E-cadherin (CDH1) heterozygous germline mutations and deletions are found in 40% of families. Independent of CDH1 alterations, most HDGC tumours display mislocalized or absent E-cadherin immunoexpression, therefore undetected defects at the CDH1 locus may still be involved. We aimed at determining whether CDH1 mutation-negative probands display germline CDH1 allele-specific expression (ASE) imbalance, using a single-nucleotide primer extension-based procedure and tried to uncover the underlying molecular defect. CDH1 ASE analysis was performed using three intragenic SNPs in RNA extracted from the blood of 21 cancer-free individuals and 22 HDGC probands (5 CDH1 mutation carriers and 17 CDH1 negative). Germline promoter methylation, deletions and haplotype-related susceptibility at the CDH1 locus were analysed. Both CDH1 alleles from cancer-free individuals displayed equivalent expression levels, whereas monoallelic CDH1 expression or high allelic expression imbalance (AI) was present in 80% of CDH1 mutant and 70.6% (n = 12) of CDH1-negative HDGC probands. Germline deletions and promoter hypermethylation were found in 25% of probands displaying high CDH1 AI. No particular haplotype was found to be associated with CDH1 high AI. Germline CDH1 AI is highly frequent among CDH1 mutation-negative probands but was not seen in cancer-free individuals. This implicates the CDH1 locus in the majority of mutation-negative HDGC families.

Indexed as

AllelesDown-RegulationGenetic Predisposition to DiseaseAdultAntigens, CDCadherinsGerm-Line MutationHaplotypesHumansStomach NeoplasmsAntigens, CDCadherinsCDH1 protein, human

Identifiers

PMID19965908
PMCPMC2816607
OpenAlexW2156606896

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.