Evidence map›Paper›PMID 19965870›Full record

ArticleThe Journal of biological chemistry2010

Global consequences of activation loop phosphorylation on protein kinase A.

Jon M Steichen, Ganesh H Iyer, Sheng Li, S Adrian Saldanha, Michael S Deal, Virgil L Woods, Susan S Taylor

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Article
  3. Active zone plasticity couples sleep need to presynaptic hypophosphorylation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Phosphorylation of enteroviral 2AJournal of medical virology · 2023
    Article
  10. Review
  11. Article
  12. Activation loop phosphorylation of a non-RD receptor kinase initiates plant innate immune signaling.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Dynamic allostery-based molecular workings of kinase:peptide complexes.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jon M SteichenFrom the Departments of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093.
Ganesh H IyerFrom the Departments of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093.
Sheng Lithe Department of Medicine and Biomedical Sciences Graduate Program, University of California, San Diego, La Jolla, California 92093.
S Adrian SaldanhaFrom the Departments of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093.
Michael S DealFrom the Departments of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093.
Virgil L Woodsthe Department of Medicine and Biomedical Sciences Graduate Program, University of California, San Diego, La Jolla, California 92093.
Susan S TaylorFrom the Departments of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093; Departments of Pharmacology, University of California, San Diego, La Jolla, California 92093; the Departments of Howard Hughes Medical Institute, University of California, San Diego, La Jolla, California 92093. Electronic address: staylor@ucsd.edu.
University of California, San Diego · US

Funding

Role of complement in kidney disorders: from hemodialysis to transportationP01AI068730 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI LAMBRIS, JOHN D · 2007 to 2018
$16.0M
GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
ACTION OF LIPOLYTIC ENZYMESR01GM020501 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 1985 to 2020
$7.3M
Epac/cAMP-GEF, A Novel Intracellular cAMP ReceptorR01GM066170 · NIGMS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CHENG, XIAODONG · 2003 to 2017
$4.6M
Protein Kinase: Primary Structure and cAMP InteractionsR01GM019301 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TAYLOR, SUSAN S. · 1985 to 2013
$3.4M
STRUCTURAL ANALYSIS OF CHROMATICALLY ACTIVE PROTEINSR01GM037684 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GETZOFF, ELIZABETH D · 1987 to 2009
$3.1M
STRUCTURE DRIVEN ANALYSIS OF EBOLA VIRUS RECEPTOR BINDING SITER01AI081982 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SAPHIRE, ERICA OLLMANN · 2010 to 2014
$2.8M
PROTEIN KINASE: PRIMARY STRUCTURE AND CAMP INTERACTIONR37GM019301 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI TAYLOR, SUSAN S · 1995 to 2004
$2.0M
Thermodynamic and structural studies on the formation of the C3 convertaseR01AI072106 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI LAMBRIS, JOHN D · 2007 to 2011
$2.0M
Enhanced Crystallography of Cancer-Implicated ProteinsR33CA099835 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WOODS, VIRGIL L · 2004 to 2006
$1.8M
Hydrogen Deuterium Exchange Mapping of Chemokine Receptor Complex InterfacesR21AI076961 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HANDEL, TRACY M, WOODS, VIRGIL L · 2008 to 2009
$425k
DXMS-Facilitated Membrane Protein Construct Design/CancerR21CA118595 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WOODS, VIRGIL L · 2006 to 2007
$420k
NCI NIH HHS CA099835NCI NIH HHS CA118595NCI NIH HHS R21 CA099835NCI NIH HHS R21 CA118595NCI NIH HHS R33 CA099835NIAID NIH HHS AI068730NIAID NIH HHS AI072106NIAID NIH HHS AI076961NIAID NIH HHS AI081982NIAID NIH HHS AI2008031NIAID NIH HHS P01 AI068730NIAID NIH HHS R01 AI072106NIAID NIH HHS R01 AI081982NIAID NIH HHS R21 AI076961NIGMS NIH HHS F32 GM020501NIGMS NIH HHS GM007752NIGMS NIH HHS GM020501NIGMS NIH HHS GM037684NIGMS NIH HHS GM066170NIGMS NIH HHS GM19301NIGMS NIH HHS R01 GM019301NIGMS NIH HHS R01 GM020501NIGMS NIH HHS R01 GM037684NIGMS NIH HHS R01 GM066170NIGMS NIH HHS R37 GM019301NIGMS NIH HHS T32 GM007752
6 · The paper itself

Abstract

Phosphorylation of the activation loop is one of the most common mechanisms for regulating protein kinase activity. The catalytic subunit of cAMP-dependent protein kinase autophosphorylates Thr(197) in the activation loop when expressed in Escherichia coli. Although mutation of Arg(194) to Ala prevents autophosphorylation, phosphorylation of Thr(197) can still be achieved by a heterologous protein kinase, phosphoinositide-dependent protein kinase (PDK1), in vitro. In this study, we examined the structural and functional consequences of adding a single phosphate to the activation loop of cAMP-dependent protein kinase by comparing the wild type C-subunit to the R194A mutant either in the presence or the absence of activation loop phosphorylation. Phosphorylation of Thr(197) decreased the K(m) by approximately 15- and 7-fold for kemptide and ATP, respectively, increased the stability of the enzyme as measured by fluorescence and circular dichroism, and enhanced the binding between the C-subunit and IP20, a protein kinase inhibitor peptide. Additionally, deuterium exchange coupled to mass spectrometry was used to compare the structural dynamics of these proteins. All of the regions of the C-subunit analyzed underwent amide hydrogen exchange at a higher or equal rate in the unphosphorylated enzyme compared with the phosphorylated enzyme. The largest changes occurred at the C terminus of the activation segment in the p + 1 loop/APE regions and the alphaH-alphaI loop motifs and leads to the prediction of a coordinated phosphorylation-induced salt bridge between two conserved residues, Glu(208) and Arg(280).

Indexed as

MutationProtein Structure, TertiaryAdenosine TriphosphateAmino Acid SequenceAmino Acid SubstitutionCatalysisCatalytic DomainCircular DichroismCyclic AMP-Dependent Protein KinasesDeuterium Exchange MeasurementEnzyme ActivationHumansHydrophobic and Hydrophilic InteractionsKineticsModels, MolecularMolecular Sequence DataAdenosine TriphosphateCyclic AMP-Dependent Protein KinaseskemptideOligopeptidesProtein SubunitsThreonineUrea

Identifiers

PMID19965870
PMCPMC2823524
OpenAlexW2019846233

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.