Evidence map›Paper›PMID 19965383›Full record

ArticleScience (New York, N.Y.)2010

Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.

Xin Liu, David A Bushnell, Dong Wang, Guillermo Calero, Roger D Kornberg

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed.

  1. The molecular basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Regulation of Eukaryotic RNAPs Activities by Phosphorylation.Frontiers in molecular biosciences · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Review

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xin LiuDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
David A Bushnell
Dong Wang
Guillermo Calero
Roger D Kornberg

Funding

Structure of the Eukaryote Transcription ApparatusR01AI021144 · NIAID · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1985 to 2018
$10.3M
STRUCTURE OF RNA POLYMERASE IIR01GM049985 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 1993 to 2020
$10.2M
RNA POLYMERASE II TRANSCRIPTION SYSTEM FROM YEASTR01GM036659 · NIGMS · STANFORD UNIVERSITY · PI KORNBERG, ROGER D · 1986 to 2016
$4.7M
Structural Basis of Transcriptional Mutagenesis and Arrest of RNA Polymerase IIR00GM085136 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, DONG · 2010 to 2012
$742k
Structural Basis of Transcriptional Mutagenesis and Arrest of RNA Polymerase IIK99GM085136 · NIGMS · STANFORD UNIVERSITY · PI WANG, DONG · 2008 to 2009
$180k
NIAID NIH HHS AI21144NIAID NIH HHS R01 AI021144NIGMS NIH HHS GM049985NIGMS NIH HHS K99 GM085136NIGMS NIH HHS R00 GM085136NIGMS NIH HHS R01 GM036659NIGMS NIH HHS R01 GM049985
6 · The paper itself

Abstract

Previous x-ray crystal structures have given insight into the mechanism of transcription and the role of general transcription factors in the initiation of the process. A structure of an RNA polymerase II-general transcription factor TFIIB complex at 4.5 angstrom resolution revealed the amino-terminal region of TFIIB, including a loop termed the "B finger," reaching into the active center of the polymerase where it may interact with both DNA and RNA, but this structure showed little of the carboxyl-terminal region. A new crystal structure of the same complex at 3.8 angstrom resolution obtained under different solution conditions is complementary with the previous one, revealing the carboxyl-terminal region of TFIIB, located above the polymerase active center cleft, but showing none of the B finger. In the new structure, the linker between the amino- and carboxyl-terminal regions can also be seen, snaking down from above the cleft toward the active center. The two structures, taken together with others previously obtained, dispel long-standing mysteries of the transcription initiation process.

Indexed as

Transcription, GeneticAmino Acid SequenceCatalytic DomainCrystallography, X-RayModels, MolecularMolecular Sequence DataProtein ConformationProtein Interaction Domains and MotifsProtein Structure, SecondaryProtein Structure, TertiaryRepetitive Sequences, Amino AcidRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factor TFIIBRNA Polymerase IISaccharomyces cerevisiae ProteinsSUA7 protein, S cerevisiaeTranscription Factor TFIIB

Identifiers

PMID19965383
PMCPMC2813267

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.