Evidence map›Paper›PMID 19962194›Full record

ArticleMolecular immunology2010

Differential transcriptomic responses of Biomphalaria glabrata (Gastropoda, Mollusca) to bacteria and metazoan parasites, Schistosoma mansoni and Echinostoma paraensei (Digenea, Platyhelminthes).

Coen M Adema, Patrick C Hanington, Cheng-Man Lun, George H Rosenberg, Anthony D Aragon, Barbara A Stout, Mara L Lennard Richard, Paul S Gross, Eric S Loker

Abstract read
In one paragraph

Article in Molecular immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Cells · 2022
    Article
  6. Article
  7. Article
  8. Examining adaptive evolution of immune activity: opportunities provided by gastropods in the age of 'omics'.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Biomphalaria glabrata immunity: Post-genome advances.Developmental and comparative immunology · 2020
    Review
  14. Article
  15. Proteomic Analysis ofFrontiers in immunology · 2018
    Article
  16. Comparative immunogenomics of molluscs.Developmental and comparative immunology · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Coen M AdemaCenter for Evolutionary and Theoretical Immunology, Biology MSC03 2020, 1 University of New Mexico, Albuquerque, NM 87131, USA. coenadem@unm.edu
Patrick C Hanington
Cheng-Man Lun
George H Rosenberg
Anthony D Aragon
Barbara A Stout
Mara L Lennard Richard
Paul S Gross
Eric S Loker
University of New Mexico · USNCCOS Hollings Marine Laboratory · US

Funding

UNM COBRE: THEORETICAL STUDY OF SPECIFICITY OF RNA SILENCING MECHANISMP20RR018754 · NCRR · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2003 to 2011
$16.7M
TREMATODE INDUCED IMMUNOSUPPRESSION IN SNAILSR01AI024340 · NIAID · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 1987 to 2010
$2.8M
Anti-pathogen responses in Biomphalaria glabrataR01AI052363 · NIAID · UNIVERSITY OF NEW MEXICO · PI ADEMA, COENRAAD M · 2003 to 2010
$2.0M
NCRR NIH HHS 1P20RR18754NCRR NIH HHS P20 RR018754NIAID NIH HHS AI024340NIAID NIH HHS AI062363NIAID NIH HHS L30 AI062363NIAID NIH HHS R01 AI024340NIAID NIH HHS R01 AI052363
6 · The paper itself

Abstract

A 70-mer-oligonucleotide-based microarray (1152 features) that emphasizes stress and immune responses factors was constructed to study transcriptomic responses of the snail Biomphalaria glabrata to different immune challenges. In addition to sequences with relevant putative ID and Gene Ontology (GO) annotation, the array features non-immune factors and unknown B. glabrata ESTs for functional gene discovery. The transcription profiles of B. glabrata (3 biological replicates, each a pool of 5 snails) were recorded at 12h post-wounding, exposure to Gram negative or Gram positive bacteria (Escherichia coli and Micrococcus luteus, respectively), or infection with compatible trematode parasites (Schistosoma mansoni or Echinostoma paraensei, 20 miracidia/snail), relative to controls, using universal reference RNA. The data were subjected to Significance Analysis for Microarrays (SAM), with a false positive rate (FPR) <or=10%. Wounding yielded a modest differential expression profile (27 up/21 down) with affected features mostly dissimilar from other treatments. Partially overlapping, yet distinct expression profiles were recorded from snails challenged with E. coli (83 up/20 down) or M. luteus (120 up/42 down), mostly showing up-regulation of defense and stress-related features. Significantly altered expression of selected immune features indicates that B. glabrata detects and responds differently to compatible trematodes. Echinostoma paraensei infection was associated mostly with down-regulation of many (immune-) transcripts (42 up/68 down), whereas S. mansoni exposure yielded a preponderance of up-regulated features (140 up/23 down), with only few known immune genes affected. These observations may reflect the divergent strategies developed by trematodes during their evolution as specialized pathogens of snails to negate host defense responses. Clearly, the immune defenses of B. glabrata distinguish and respond differently to various immune challenges.

Indexed as

Gene Expression ProfilingAnimalsBacteriaBiomphalariaEchinostomaGene Expression RegulationOligonucleotide Array Sequence AnalysisParasitesReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSchistosoma mansoniStress, PhysiologicalTime FactorsTranscription, GeneticRNA, Messenger

Identifiers

PMID19962194
PMCPMC2814977
OpenAlexW2090234457

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.